Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 1.3e-219 766.1 411 100.0
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.3e-171 606.7 412 81.3
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 1.2e-167 593.6 413 81.1
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.9e-165 586.3 413 80.1
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.5e-157 559.3 384 80.2
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.2e-151 540.4 375 80.5
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.5e-117 427.2 415 60.2
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.2e-116 424.1 417 58.5
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.4e-115 420.6 434 58.8
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 6.8e-115 418.3 413 59.6
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.7e-113 412.5 415 60.0
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.0e-110 404.4 414 57.2
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 9.5e-109 397.9 419 56.3
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 3.0e-107 392.9 386 59.1
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 9.8e-106 387.9 414 55.8
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 9.2e-104 381.3 417 54.0
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 7.3e-101 371.7 412 53.6
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 6.2e-100 368.6 243 85.6
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 1.3e-97 360.9 475 47.6
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.7e-97 360.5 475 47.4
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.7e-95 353.2 475 48.0
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.0e-95 352.1 466 47.0
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.0e-94 351.3 466 47.4
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.1e-93 347.8 466 47.0
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 3.3e-93 346.3 428 52.8
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.8e-92 343.2 345 57.7
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 1.1e-91 341.3 421 52.0
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.3e-91 340.1 413 53.3
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 3.7e-89 332.8 419 47.7
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 8.3e-89 331.6 415 51.6
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 4.1e-88 329.3 395 50.9
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 4.1e-88 329.3 385 51.4
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.6e-87 327.4 423 48.0
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 3.5e-87 326.2 425 51.1
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.5e-87 326.2 423 50.6
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 4.3e-85 319.3 410 49.8
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 4.0e-83 312.8 436 47.9
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 6.8e-83 312.0 452 45.6
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 4.4e-82 309.3 351 52.4
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 1.1e-80 304.7 293 61.1
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 5.4e-80 302.4 429 46.6
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 7.1e-80 302.0 429 46.9
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 1.3e-78 297.7 426 46.5
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 3.3e-77 293.1 425 47.5
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 5.6e-77 292.4 411 46.5
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 7.3e-77 292.0 261 65.1
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 9.6e-77 291.6 450 44.9
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.4e-75 287.0 462 43.7
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 2.4e-75 287.0 376 48.4
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 4.0e-75 286.2 426 46.7
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.6e-74 283.5 440 44.3
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.7e-73 280.8 393 45.3
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.8e-73 279.6 318 55.0
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 8.4e-73 278.5 442 45.5
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 9.3e-72 275.0 409 46.7
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 6.0e-71 272.3 434 42.9
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.3e-70 271.2 404 45.3
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 3.0e-70 270.0 466 43.8
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 8.7e-70 268.5 464 42.7
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 7.3e-69 265.4 466 41.6
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 7.3e-69 265.4 385 45.5
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 1.1e-67 261.5 423 41.8
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 2.0e-66 257.3 465 38.9
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.3e-65 254.6 465 38.7
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.7e-65 254.2 413 43.3
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 2.2e-65 253.8 476 38.4
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 6.4e-65 252.3 405 43.2
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.9e-64 250.8 270 54.4
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.9e-64 250.8 419 42.5
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 5.4e-64 249.2 260 56.2
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.2e-63 248.1 474 39.9
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 1.2e-63 248.1 345 45.5
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.0e-62 245.0 471 39.7
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.3e-62 244.6 391 44.5
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 3.9e-62 243.0 413 43.1
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 3.6e-60 236.5 343 46.4
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 3.6e-60 236.5 422 40.0
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.1e-59 235.0 290 53.1
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.1e-59 235.0 421 38.7
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 1.4e-59 234.6 424 41.0
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 3.1e-59 233.4 406 40.4
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.8e-58 229.2 220 60.9
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.7e-57 227.6 438 39.5
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 1.1e-56 224.9 390 42.8
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.9e-56 224.2 388 42.5
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 3.2e-56 223.4 435 39.3
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 3.2e-56 223.4 404 38.6
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 4.2e-56 223.0 377 37.9
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 7.1e-56 222.2 265 48.3
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.2e-55 221.5 440 40.0
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.6e-55 221.1 408 37.3
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 1.8e-54 217.6 423 40.4
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 3.0e-54 216.9 424 39.9
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 2.5e-53 213.8 428 39.5
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 3.3e-53 213.4 441 38.8
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 6.2e-52 209.1 243 55.6
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 2.4e-51 207.2 464 37.9
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 1.5e-50 204.5 280 49.3
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 2.9e-49 200.3 419 37.2
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.5e-49 199.1 298 47.0
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 6.0e-47 192.6 355 36.9
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 1.3e-44 184.9 452 36.3
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 1.6e-44 184.5 270 47.0
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 6.9e-43 179.1 471 35.0
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.2e-42 178.3 330 37.0
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.4e-42 176.8 255 43.9
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 1.0e-41 175.3 203 53.7
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 4.2e-40 169.9 331 37.2
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 6.3e-36 156.0 439 32.6
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 7.7e-34 149.1 289 39.1
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 1.1e-32 145.2 290 40.0
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 5.1e-30 136.3 150 56.0
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.3e-28 131.7 115 61.7
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.9e-25 120.6 257 39.7
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.4e-22 111.7 130 50.0
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 3.0e-22 110.5 328 32.6
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 5.1e-22 109.8 499 27.3
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 4.4e-21 106.7 417 30.0
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 9.1e-19 99.0 94 53.2
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-18 98.6 142 49.3
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 5.9e-18 96.3 80 73.8
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.9e-17 94.0 74 58.1
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 3.2e-16 90.5 152 39.5
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.2e-16 90.1 111 49.5
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.7e-15 86.7 84 63.1
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.0e-14 85.5 110 49.1
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.8e-14 84.7 68 55.9
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 3.0e-14 84.0 123 40.7
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.5e-13 81.6 69 59.4
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 7.0e-11 72.8 146 36.3
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 9.1e-11 72.4 71 52.1
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 9.1e-11 72.4 81 59.3
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.0e-10 71.2 147 37.4
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.1e-08 65.5 59 62.7
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.8e-06 58.2 112 36.6


User provided reference genes

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