Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1643.2 835 100.0
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1503.8 841 91.2
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1484.2 841 89.8
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1483.0 855 88.7
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1475.7 841 89.3
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1453.3 841 87.3
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1444.1 841 87.0
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1333.5 848 80.7
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1325.1 848 80.2
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1325.1 850 80.1
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1322.8 853 79.2
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1310.0 870 77.9
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1309.3 853 78.5
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1309.3 846 78.4
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1308.5 841 80.3
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1308.5 869 77.9
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1302.7 870 77.1
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1298.5 859 77.3
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1298.1 829 79.7
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1298.1 856 77.9
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1297.7 868 77.5
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1297.3 842 79.1
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1293.9 882 75.3
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1285.4 850 77.1
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1284.2 912 74.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1282.3 881 75.9
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1280.0 872 76.3
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1270.0 841 76.8
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1270.0 926 71.9
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1266.9 914 72.8
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1264.2 897 73.6
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1263.1 847 76.9
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1262.7 831 76.7
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1260.7 858 75.2
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1260.4 845 75.7
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1258.8 858 74.7
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1255.4 900 72.8
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1254.2 733 85.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1254.2 879 74.4
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1253.4 861 73.2
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1252.3 829 77.0
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1251.5 882 73.6
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1249.6 900 71.4
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1249.6 870 73.9
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1248.4 895 72.7
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1246.9 871 74.7
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1246.5 897 72.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1245.7 907 72.0
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1245.7 868 73.6
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1245.0 829 76.8
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1244.2 897 72.6
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1244.2 844 75.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1244.2 905 71.2
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1243.4 897 72.6
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1243.4 860 74.2
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1241.1 897 72.5
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1239.6 902 71.4
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 882 73.0
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1234.6 867 73.5
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1233.4 891 71.4
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1233.0 846 75.8
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1229.2 884 71.6
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1228.4 846 74.1
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1228.0 872 73.1
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1224.5 870 73.0
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1221.5 899 70.7
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1219.9 864 74.2
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1216.8 863 73.1
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 830 75.3
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 878 70.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1215.3 915 68.6
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 895 71.2
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1211.4 917 69.9
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 860 73.1
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1209.9 873 72.2
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1208.4 903 70.9
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1202.6 895 70.3
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1200.3 920 68.3
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1199.5 867 72.7
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 911 69.7
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1198.0 867 71.7
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1196.4 834 74.1
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1195.6 872 72.4
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 797 75.9
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 868 71.2
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 925 67.8
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1186.4 869 71.7
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1181.8 879 70.9
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1181.8 819 74.7
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1180.6 893 69.9
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 895 70.2
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 942 66.3
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1174.5 858 69.8
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1172.9 876 71.0
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1171.0 893 69.3
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1168.7 868 70.6
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1161.0 821 73.8
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1154.0 893 68.8
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 940 67.0
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1146.0 878 69.2
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1146.0 812 73.6
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1144.0 878 69.2
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1142.9 892 67.0
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1142.1 830 70.8
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1128.2 836 68.1
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1124.0 835 69.7
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 1002 61.3
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1107.8 818 69.4
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1099.0 823 68.4
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.9e-310 1068.9 831 65.1
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.5e-302 1042.7 817 67.6
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.7e-298 1029.2 891 63.9
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 1.4e-284 983.0 850 64.6
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.2e-283 979.9 714 69.9
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 4.2e-281 971.5 689 73.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 7.2e-281 970.7 721 71.8
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.2e-280 969.9 703 70.4
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 9.7e-278 960.3 961 58.3
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 2.2e-269 932.6 825 57.7
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 3.2e-265 918.7 593 77.1
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 5.9e-259 897.9 864 55.8
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 5.9e-259 897.9 505 84.8
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.0e-255 887.1 831 56.6
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.0e-247 859.0 684 66.4
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 8.4e-189 664.8 608 59.2
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.1e-183 647.9 352 90.3
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.6e-182 643.3 517 67.5
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.9e-174 615.5 451 67.6
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.0e-173 614.8 371 78.2
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.7e-168 597.4 341 81.5
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.2e-164 582.8 529 63.5
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.8e-162 577.4 359 76.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.1e-156 558.1 456 65.6
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.1e-140 505.0 841 38.2
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.8e-139 500.4 726 42.3
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.8e-136 490.3 473 61.1
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 9.2e-135 485.3 980 35.9
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.5e-124 451.4 305 72.5
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.5e-116 424.9 443 59.8
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 8.9e-114 415.6 297 70.0
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 7.1e-103 379.4 991 30.5
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 2.2e-96 357.8 595 41.3
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.4e-95 354.4 334 66.8
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.3e-77 295.4 165 84.8
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.7e-54 218.0 327 42.8
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 4.4e-52 210.7 141 85.1
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.1e-44 186.0 104 83.7
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.3e-37 161.8 107 72.9
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 5.2e-37 160.6 107 69.2
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 1.2e-30 139.4 115 62.6
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 4.0e-21 107.8 86 65.1
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.4e-20 104.8 77 68.8
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.7e-19 102.4 61 80.3
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 8.6e-16 90.1 95 62.1
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-13 82.0 94 50.0
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 3.1e-13 81.6 57 70.2
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 6.8e-13 80.5 66 59.1
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 8.9e-13 80.1 94 50.0
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.9e-13 80.1 45 84.4
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.2e-10 71.6 53 69.8
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 6.0e-09 67.4 52 65.4
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.3e-08 65.5 58 58.6
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 3.0e-08 65.1 41 70.7
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.1e-06 58.9 47 66.0


User provided reference genes

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