Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1491.5 744 100.0
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1328.9 841 81.1
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1307.7 841 80.3
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1304.7 841 79.3
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1300.4 855 78.2
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1294.6 841 78.8
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1268.4 841 76.8
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1258.4 841 76.6
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1170.6 848 71.2
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1168.3 853 70.6
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1164.8 854 71.4
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 869 70.1
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1161.7 852 71.4
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1160.2 862 69.4
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 836 71.5
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1152.1 887 68.2
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1151.3 865 69.2
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1149.0 849 70.2
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 868 69.4
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 847 69.7
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1147.1 869 69.0
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1144.0 843 69.9
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1143.6 848 70.0
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1132.1 870 68.2
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1131.3 859 68.5
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1128.6 837 68.8
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1127.1 911 65.6
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1124.8 926 64.0
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1122.5 888 66.8
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1119.0 858 67.4
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1115.9 857 67.0
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1115.1 870 66.9
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1114.4 858 66.9
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1113.6 908 65.2
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1108.6 858 67.6
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1107.8 847 67.1
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1107.0 730 77.0
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1104.0 831 67.6
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1101.3 817 68.7
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1099.7 879 65.6
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1097.4 847 67.3
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1096.6 897 64.5
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1096.6 870 65.9
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1095.5 900 64.2
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1093.6 847 67.3
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1091.6 866 65.4
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1091.3 860 66.3
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1089.7 906 63.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1089.7 886 64.6
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1089.7 900 63.2
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1087.4 897 63.7
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1085.5 869 64.4
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1084.7 860 67.3
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1083.6 891 64.0
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1082.8 860 66.9
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1081.6 845 67.8
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1081.2 869 64.7
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1079.7 888 65.1
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1079.3 903 63.0
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1078.5 834 67.4
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1077.4 863 65.8
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.0e-311 1072.8 903 64.2
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.5e-311 1072.4 903 64.2
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.0e-311 1072.0 903 64.2
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 2.0e-311 1072.0 857 65.7
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 6.1e-311 1070.5 905 62.8
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 1.3e-310 1069.3 888 64.8
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 2.2e-310 1068.5 863 64.8
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 6.6e-310 1067.0 877 63.9
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 6.6e-310 1067.0 878 63.2
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 3.3e-309 1064.7 837 67.0
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 6.1e-308 1060.4 768 71.4
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 1.0e-307 1059.7 916 62.1
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 2.3e-307 1058.5 915 60.8
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 3.0e-307 1058.1 894 62.8
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 4.0e-307 1057.7 870 64.4
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 5.2e-307 1057.4 866 65.1
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 5.2e-307 1057.4 862 64.8
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 1.2e-306 1056.2 929 61.9
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 7.5e-306 1053.5 922 60.7
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 1.3e-305 1052.7 895 62.2
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 1.7e-305 1052.4 895 61.9
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 1.4e-304 1049.3 873 64.3
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 5.4e-304 1047.3 890 63.1
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 9.2e-304 1046.6 932 59.8
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 9.2e-304 1046.6 867 64.0
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 2.7e-303 1045.0 893 63.0
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 2.7e-303 1045.0 869 64.3
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 6.0e-303 1043.9 911 61.0
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 6.0e-303 1043.9 817 67.3
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 6.6e-302 1040.4 876 63.0
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 8.6e-302 1040.0 899 61.3
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 1.6e-300 1035.8 798 67.0
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 1.6e-300 1035.8 890 62.8
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 4.7e-300 1034.2 862 64.3
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 8.0e-300 1033.5 858 62.7
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 2.0e-298 1028.9 937 59.1
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 5.4e-296 1020.8 840 63.3
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 7.0e-296 1020.4 821 66.1
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 7.8e-295 1016.9 891 61.8
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 2.8e-292 1008.4 800 66.0
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 3.6e-292 1008.1 837 64.4
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 2.2e-289 998.8 811 65.2
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 1.1e-288 996.5 827 60.8
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 5.4e-288 994.2 877 61.9
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 5.4e-288 994.2 877 61.2
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 5.4e-288 994.2 930 58.5
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 1.7e-286 989.2 999 55.5
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 4.6e-279 964.5 826 60.5
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 8.1e-276 953.7 817 62.9
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 7.1e-272 940.6 615 76.7
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 3.5e-271 938.3 593 78.8
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.5e-269 932.2 806 60.0
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 5.8e-266 921.0 621 74.7
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 7.1e-264 914.1 505 85.9
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 2.0e-250 869.4 895 54.9
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 2.9e-241 839.0 849 56.7
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.1e-237 827.0 784 55.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 6.3e-236 821.2 721 62.3
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 3.4e-234 815.5 688 63.1
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 6.7e-230 801.2 961 50.6
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 3.2e-224 782.3 899 48.5
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 8.2e-220 767.7 831 49.3
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 8.6e-201 704.5 684 56.3
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.4e-182 644.0 352 89.8
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.1e-175 620.2 451 68.7
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 6.2e-175 618.6 371 79.0
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.1e-169 599.0 341 82.7
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 8.4e-164 581.6 360 78.1
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.1e-158 563.1 465 65.2
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 2.6e-157 560.1 600 51.3
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.1e-143 513.8 510 56.9
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 3.4e-125 453.4 305 72.8
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 6.3e-119 432.6 528 49.2
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 3.6e-114 416.8 297 70.7
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 4.7e-114 416.4 818 35.1
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 4.4e-112 409.8 716 36.9
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.2e-111 407.5 549 41.2
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 1.3e-100 371.7 603 41.8
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.2e-97 359.8 386 55.7
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 8.5e-92 342.4 494 38.5
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 5.9e-77 293.1 165 84.8
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.9e-71 274.2 445 42.7
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.3e-57 228.0 328 44.2
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 9.2e-54 216.1 319 45.5
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.2e-45 189.1 104 85.6
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.1e-38 166.0 101 77.2
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.2e-38 164.5 107 74.8
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.0e-36 157.9 107 69.2
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 5.8e-32 143.7 117 62.4
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 2.7e-21 108.2 86 66.3
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.3e-20 105.1 77 67.5
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.1e-19 102.8 61 78.7
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 9.6e-19 99.8 96 62.5
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 2.7e-13 81.6 57 68.4
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 6.1e-13 80.5 70 60.0
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.8e-12 79.0 45 80.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-12 78.2 168 36.3
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 9.7e-11 73.2 53 71.7
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 3.1e-09 68.2 52 65.4
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.0e-08 65.5 58 56.9
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 5.9e-08 63.9 41 65.9
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 5.5e-06 57.4 47 63.8


User provided reference genes

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