Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 5.6e-115 417.5 199 100.0
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 3.1e-105 385.2 200 92.0
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 8.9e-105 383.6 200 91.5
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.6e-101 372.9 200 88.0
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.1e-101 372.5 200 87.5
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.5e-101 371.7 198 88.4
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 6.0e-101 370.9 220 82.7
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 6.0e-101 370.9 200 87.5
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 3.0e-100 368.6 199 85.9
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.0e-100 368.6 198 86.9
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 1.5e-99 366.3 196 88.3
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 4.3e-99 364.8 200 84.5
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 9.6e-99 363.6 204 84.3
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 2.4e-97 359.0 201 85.1
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 4.0e-97 358.2 203 83.7
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 5.3e-97 357.8 198 86.4
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 5.3e-97 357.8 202 83.7
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 1.2e-96 356.7 200 81.5
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 4.5e-96 354.8 206 80.1
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 9.9e-96 353.6 198 82.3
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 1.7e-95 352.8 200 83.0
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.1e-94 350.1 200 83.0
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.4e-94 349.0 194 82.5
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 4.2e-94 348.2 200 82.5
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.1e-93 345.9 200 82.0
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 2.7e-93 345.5 201 82.6
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.7e-92 342.8 200 79.5
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 2.5e-91 339.0 200 79.0
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 2.5e-91 339.0 208 79.3
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 4.3e-91 338.2 208 78.8
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 1.6e-90 336.3 202 80.2
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 2.1e-90 335.9 195 80.0
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 2.1e-90 335.9 204 76.5
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.1e-90 335.9 200 77.5
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 2.8e-90 335.5 196 78.1
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.8e-90 334.7 200 78.5
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 8.1e-90 334.0 200 76.5
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 1.1e-89 333.6 201 74.6
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 1.8e-89 332.8 201 78.1
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 4.0e-89 331.6 198 75.8
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 4.0e-89 331.6 204 74.0
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 2.0e-88 329.3 203 74.9
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 2.6e-88 328.9 201 74.1
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 3.4e-88 328.6 192 81.2
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 4.5e-88 328.2 205 75.6
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.5e-88 328.2 192 78.6
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 4.5e-88 328.2 192 78.6
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 7.6e-88 327.4 202 76.2
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.3e-87 326.6 201 75.1
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.2e-87 325.9 201 75.1
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 6.4e-87 324.3 185 81.6
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 1.1e-86 323.6 201 76.6
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 5.5e-86 321.2 207 72.0
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 1.6e-85 319.7 201 75.1
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 2.7e-85 318.9 274 60.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 3.5e-85 318.5 192 76.0
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 3.5e-85 318.5 193 73.6
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 6.0e-85 317.8 194 75.8
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.3e-84 316.6 200 73.0
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 3.9e-84 315.1 197 72.1
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 5.1e-84 314.7 191 78.5
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 8.7e-84 313.9 199 73.9
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 7.4e-83 310.8 190 74.2
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 2.8e-82 308.9 198 72.7
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 3.7e-82 308.5 201 71.6
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 6.2e-82 307.8 191 71.2
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 6.2e-82 307.8 200 72.0
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 1.1e-81 307.0 199 71.4
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.1e-81 307.0 200 70.0
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 2.4e-81 305.8 200 70.5
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 2.4e-81 305.8 206 68.9
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 2.6e-80 302.4 201 69.7
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 3.4e-80 302.0 203 71.4
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 4.5e-80 301.6 186 74.2
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 5.8e-80 301.2 207 69.6
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 7.6e-80 300.8 202 68.8
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.3e-79 300.1 201 68.7
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.7e-79 299.7 202 68.3
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.2e-79 299.3 196 70.9
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 3.2e-78 295.4 200 70.5
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 4.2e-78 295.0 196 69.9
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 5.5e-78 294.7 195 69.7
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 5.5e-78 294.7 195 69.7
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.6e-77 293.1 198 69.7
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 2.1e-77 292.7 191 70.7
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 6.0e-77 291.2 196 69.4
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.0e-76 290.4 273 56.4
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 1.8e-76 289.7 196 68.9
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 1.8e-76 289.7 195 69.2
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 5.1e-76 288.1 179 74.3
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 1.9e-75 286.2 192 69.3
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 3.3e-75 285.4 204 64.2
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 5.7e-75 284.6 204 64.2
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 2.8e-74 282.3 197 66.5
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 2.8e-74 282.3 193 68.9
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.1e-73 280.4 210 67.6
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 2.4e-73 279.3 192 68.8
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 5.3e-73 278.1 204 62.3
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 6.9e-73 277.7 193 66.8
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 9.0e-73 277.3 198 65.2
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.5e-72 276.6 198 65.2
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 2.0e-72 276.2 198 64.1
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 5.9e-72 274.6 198 63.6
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 1.0e-71 273.9 196 63.3
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 2.2e-71 272.7 179 70.4
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.1e-70 270.4 145 81.4
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.6e-69 266.5 182 68.1
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 3.6e-69 265.4 164 78.7
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.6e-69 265.4 200 65.0
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 1.3e-68 263.5 188 66.5
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 3.9e-68 261.9 194 61.9
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 5.1e-68 261.5 182 67.6
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 5.1e-68 261.5 182 67.6
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 1.9e-67 259.6 200 61.5
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.6e-66 256.5 158 76.6
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.8e-66 255.8 173 68.8
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 3.7e-66 255.4 200 61.0
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 1.0e-63 247.3 199 61.8
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.7e-63 246.5 291 47.1
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.9e-62 243.0 182 64.3
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 3.6e-61 238.8 217 56.7
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 7.9e-61 237.7 201 58.7
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 6.7e-60 234.6 143 68.5
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 4.8e-58 228.4 139 74.8
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.1e-57 227.3 189 65.1
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 4.1e-57 225.3 196 56.1
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.9e-56 221.5 187 54.5
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.3e-55 220.3 141 75.2
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 8.5e-55 217.6 183 57.9
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 8.5e-55 217.6 189 54.5
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 1.1e-54 217.2 207 50.7
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.5e-54 214.9 154 63.0
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.7e-53 212.6 160 63.8
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 1.4e-52 210.3 154 66.9
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 2.3e-52 209.5 168 60.7
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.1e-51 207.2 187 57.8
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.1e-51 207.2 135 75.6
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 6.3e-50 201.4 205 49.3
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 2.4e-49 199.5 188 51.6
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 4.1e-49 198.7 187 49.7
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.6e-48 196.1 108 75.0
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 7.2e-46 188.0 203 50.2
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 5.2e-44 181.8 203 49.8
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 2.0e-43 179.9 200 42.0
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 4.4e-43 178.7 189 45.5
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 6.3e-42 174.9 149 59.1
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.4e-41 173.7 134 63.4
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 2.4e-41 172.9 195 43.1
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 5.5e-38 161.8 191 45.5
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 5.5e-38 161.8 191 45.5
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.6e-37 160.2 191 45.0
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 2.7e-32 142.9 197 42.6
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.2e-28 128.6 87 64.4
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 8.3e-26 121.3 90 60.0
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.7e-18 97.1 74 62.2
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 6.4e-18 95.1 149 39.6
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 5.9e-16 88.6 158 31.6
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 1.7e-15 87.0 163 30.1
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 3.0e-15 86.3 153 30.1
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 3.0e-15 86.3 158 31.0
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 3.9e-15 85.9 160 30.0
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 5.0e-15 85.5 160 30.0
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 1.1e-14 84.3 160 30.0
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 1.9e-14 83.6 160 31.9
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 2.5e-14 83.2 151 31.1
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 2.5e-14 83.2 158 30.4
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 2.1e-13 80.1 166 30.7
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 1.4e-12 77.4 158 30.4
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 5.2e-12 75.5 158 29.1
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 6.8e-12 75.1 157 29.9
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 2.0e-11 73.6 161 28.6
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 7.5e-11 71.6 49 53.1
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 9.8e-11 71.2 39 79.5
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 4.9e-10 68.9 56 67.9
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 1.7e-07 60.5 92 35.9


User provided reference genes

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