Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 1.0e-251 872.8 421 100.0
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 3.2e-221 771.5 421 89.3
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.8e-217 758.4 421 87.4
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 3.1e-216 755.0 421 86.9
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.6e-215 752.7 421 86.5
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 3.5e-215 751.5 421 85.5
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.2e-172 610.1 418 71.5
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 7.5e-170 600.9 418 70.6
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 1.3e-169 600.1 418 70.6
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.9e-168 596.3 424 69.3
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 3.2e-168 595.5 422 69.2
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 1.0e-166 590.5 422 69.0
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.8e-164 582.4 426 67.6
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.4e-163 580.1 420 66.9
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.6e-162 575.9 425 65.2
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 4.4e-162 575.1 420 66.2
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 3.8e-161 572.0 421 67.7
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.4e-160 569.3 425 66.4
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 4.1e-160 568.5 416 66.3
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 7.8e-159 564.3 417 65.5
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.8e-159 564.3 420 65.0
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 2.3e-158 562.8 425 65.9
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.9e-158 562.0 411 66.2
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.9e-158 562.0 420 65.0
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 5.1e-158 561.6 423 65.7
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.1e-158 561.6 423 64.5
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 6.6e-158 561.2 415 65.5
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.1e-157 560.5 421 66.5
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.3e-157 558.9 420 64.5
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.3e-157 558.5 419 64.7
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 9.6e-157 557.4 423 64.1
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 2.8e-156 555.8 420 63.1
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 3.6e-156 555.4 423 64.5
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.4e-155 553.5 423 65.0
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.4e-155 553.5 423 62.9
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.4e-155 553.5 423 62.9
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.8e-155 553.1 421 63.2
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 1.8e-155 553.1 422 62.8
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 6.9e-155 551.2 415 62.7
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.6e-154 549.3 420 62.4
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 5.8e-154 548.1 422 63.0
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 3.8e-153 545.4 422 62.8
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 4.9e-153 545.0 421 60.8
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 8.4e-153 544.3 420 62.4
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.1e-152 543.9 424 64.2
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 4.2e-152 542.0 424 63.9
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 4.2e-152 542.0 427 62.1
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 4.2e-152 542.0 422 62.3
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 1.6e-151 540.0 530 55.3
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 2.7e-151 539.3 417 62.6
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 3.5e-151 538.9 414 59.9
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 3.0e-150 535.8 422 61.1
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.1e-149 533.9 421 62.2
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.5e-149 533.5 449 59.5
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 4.3e-149 531.9 422 62.1
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 5.6e-149 531.6 412 63.3
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 1.6e-148 530.0 423 62.9
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.8e-148 529.3 427 61.4
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 4.8e-148 528.5 398 65.3
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 6.2e-148 528.1 428 60.7
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 4.0e-147 525.4 421 61.5
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 8.4e-145 517.7 392 62.8
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 4.2e-144 515.4 411 61.1
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 3.5e-143 512.3 415 59.8
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 4.6e-143 511.9 424 58.5
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.3e-142 510.4 500 53.2
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.3e-142 510.4 425 58.1
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.9e-141 506.5 416 59.9
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 3.3e-141 505.8 420 59.8
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 2.1e-140 503.1 419 58.0
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.8e-140 501.9 412 58.7
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 1.4e-139 500.4 421 59.9
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.0e-139 498.8 412 58.5
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 5.3e-139 498.4 392 62.5
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.5e-138 496.9 425 58.1
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 1.5e-138 496.9 421 57.7
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 3.4e-138 495.7 421 56.1
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 4.5e-138 495.4 528 50.4
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 1.3e-137 493.8 432 57.2
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 2.9e-137 492.7 478 53.6
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.9e-137 492.7 427 58.8
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 3.8e-137 492.3 421 57.5
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 6.4e-137 491.5 415 56.4
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.4e-136 490.3 415 56.6
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 3.2e-136 489.2 434 56.5
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 4.2e-136 488.8 423 56.7
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 9.3e-136 487.6 424 57.1
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.2e-135 487.3 428 56.3
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 1.2e-135 487.3 421 55.6
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.3e-134 483.8 416 58.4
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.0e-134 482.6 421 56.3
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 9.6e-133 477.6 461 53.1
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 9.6e-133 477.6 401 58.4
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 1.6e-132 476.9 451 51.9
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 3.7e-132 475.7 419 55.1
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 3.7e-132 475.7 417 55.4
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 8.2e-132 474.6 425 55.3
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 1.8e-131 473.4 423 53.7
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.6e-130 469.5 420 55.2
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 5.8e-130 468.4 467 49.9
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 5.8e-130 468.4 425 54.8
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 2.2e-129 466.5 406 57.9
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.9e-129 466.1 423 53.4
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.9e-129 466.1 423 53.4
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 4.9e-129 465.3 423 53.4
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 9.3e-128 461.1 373 61.7
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 1.8e-126 456.8 414 53.9
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 5.7e-125 451.8 449 50.1
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.5e-114 417.2 342 60.5
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.5e-114 417.2 342 60.5
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 2.9e-105 386.3 447 45.9
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 1.5e-101 374.0 440 43.6
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 9.7e-101 371.3 300 59.7
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.4e-99 367.5 416 45.0
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 1.2e-98 364.4 416 44.0
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.2e-92 343.6 247 63.2
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 2.9e-89 333.2 421 44.4
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.0e-86 323.2 268 57.8
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.8e-79 300.1 165 77.6
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 3.0e-78 296.6 342 47.1
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.6e-74 284.3 430 37.7
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 5.6e-72 275.8 141 83.0
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 2.1e-71 273.9 542 34.1
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 4.4e-69 266.2 149 76.5
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.7e-63 246.1 139 76.3
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 4.1e-51 206.5 121 71.1
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 6.8e-46 189.1 91 84.6
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 5.1e-41 172.9 81 100.0
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 4.7e-39 166.4 234 44.0
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.0e-37 161.0 196 40.3
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 6.0e-26 122.9 73 75.3
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 6.0e-26 122.9 73 75.3
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.0e-25 120.6 93 61.3
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 2.0e-21 107.8 59 74.6
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 1.0e-17 95.5 138 37.7
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 6.7e-17 92.8 66 63.6
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 6.9e-14 82.8 177 32.8
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.5e-13 81.6 73 58.9
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 5.8e-13 79.7 61 65.6
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 3.5e-10 70.5 74 52.7


User provided reference genes

Program Settings