Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1664.4 924 100.0
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1477.2 937 89.4
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1467.2 939 89.1
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1387.1 929 84.0
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 0.0e+00 1387.1 929 85.0
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1382.5 929 85.0
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1232.2 947 70.0
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1218.0 933 70.4
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1212.6 941 70.4
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1202.6 967 68.1
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1182.9 949 72.6
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1172.1 952 72.7
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1163.3 941 73.8
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1162.1 1045 62.7
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1150.6 944 64.4
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1146.7 950 71.5
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1142.5 931 72.4
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1137.1 962 70.2
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1135.2 953 66.0
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1127.9 972 64.5
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1127.5 945 66.6
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1126.3 958 69.0
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1123.6 921 71.2
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1121.7 907 67.4
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1121.3 971 64.6
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1118.2 965 66.3
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1115.1 956 68.8
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1111.7 946 62.8
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1110.1 950 64.6
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1108.6 945 65.5
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1108.6 957 67.9
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1107.4 940 69.5
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1106.7 957 64.1
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1104.0 911 66.0
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1102.0 934 64.3
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1100.5 971 67.4
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1098.2 902 65.6
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1097.8 947 65.2
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1095.9 944 64.7
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1094.3 949 68.9
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1093.6 943 64.5
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1093.2 886 66.4
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1093.2 953 69.3
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1092.4 975 60.1
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1091.6 957 63.5
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1090.1 947 64.4
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1090.1 969 65.1
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1087.4 905 65.2
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 0.0e+00 1083.9 929 68.7
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 943 68.3
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1080.9 952 63.9
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1076.6 960 67.4
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 6.3e-312 1074.3 969 65.8
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 6.3e-312 1073.9 938 67.9
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 2.5e-311 1072.0 938 67.8
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 5.7e-311 1070.8 941 67.7
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 4.0e-309 1064.7 938 63.2
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 9.0e-309 1063.5 938 67.4
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.2e-308 1063.1 957 62.5
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 7.6e-308 1060.4 960 62.9
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 1.7e-307 1059.3 936 63.2
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 1.1e-306 1056.6 947 62.8
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 3.9e-304 1048.1 873 63.8
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 6.3e-302 1040.8 930 60.2
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 5.3e-301 1037.7 988 59.9
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 1.0e-299 1033.5 933 66.7
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 2.2e-299 1032.3 954 65.5
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 2.9e-299 1031.9 962 65.7
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 2.1e-297 1025.8 929 61.4
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 1.9e-295 1019.2 958 65.2
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 2.5e-295 1018.8 964 60.1
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.2e-294 1015.8 973 59.8
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.2e-292 1010.0 963 59.0
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 1.5e-292 1009.6 984 58.7
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 1.3e-291 1006.5 932 60.5
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 4.2e-290 1001.5 958 58.2
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 2.8e-286 988.8 955 58.3
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 2.4e-285 985.7 939 57.7
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 2.6e-284 982.2 952 63.4
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 2.2e-283 979.2 955 62.2
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 4.7e-281 971.5 952 57.7
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 4.4e-279 964.9 940 59.6
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 7.0e-277 957.6 953 62.5
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 7.0e-277 957.6 953 62.5
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 2.5e-274 949.1 953 60.8
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 5.5e-274 948.0 808 65.5
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 4.0e-272 941.8 958 62.0
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 3.1e-269 932.2 952 61.4
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.7e-267 926.4 947 60.8
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 2.9e-267 925.6 949 60.9
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 5.0e-267 924.9 949 61.1
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.9e-266 922.9 949 60.9
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 2.5e-266 922.5 949 61.0
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 2.7e-265 919.1 933 56.9
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 1.4e-264 916.8 968 59.7
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.8e-264 916.4 958 59.6
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 1.3e-262 910.2 940 59.8
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 2.9e-259 899.0 957 55.0
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 5.6e-242 841.6 989 50.6
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 2.9e-222 776.2 870 51.5
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 2.1e-220 770.0 771 55.5
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 2.5e-218 763.1 831 53.4
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 2.3e-179 633.6 834 45.6
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 5.1e-171 605.9 825 49.9
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 9.7e-170 601.7 599 60.4
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 2.2e-161 573.9 844 48.2
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 6.6e-134 482.6 505 54.3
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.7e-129 468.0 457 55.8
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.1e-123 448.7 559 44.2
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 4.4e-122 443.4 806 36.8
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 1.1e-91 342.4 915 30.7
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 1.6e-87 328.6 783 31.9
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 1.9e-80 305.1 353 53.5
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 5.0e-65 253.8 879 26.2
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 1.7e-60 238.8 258 51.6
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 3.4e-58 231.1 438 39.5
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 4.7e-55 220.7 259 47.5
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.3e-52 212.6 172 64.0
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 1.3e-25 122.9 86 72.1
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 3.3e-24 118.2 100 61.0
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.3e-22 112.1 67 74.6
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 2.6e-21 108.6 90 60.0
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 5.7e-21 107.5 90 60.0
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 2.0e-18 99.0 66 74.2
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.5e-18 98.2 190 36.8
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 3.5e-18 98.2 100 56.0
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 4.6e-18 97.8 90 58.9
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.2e-12 79.0 150 35.3
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.7e-10 72.0 35 94.3
COL.COLO4_00339 Corchorus olitorius HOM05D005717 ORTHO05D007221 3.5e-10 71.6 114 49.1
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 9.5e-08 63.5 172 36.6
TAR622G0109 Trochodendron aralioides HOM05D048081 ORTHO05D051495 2.1e-07 62.4 55 56.4


User provided reference genes

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