Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 0.0e+00 1935.2 967 100.0
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 0.0e+00 1532.7 973 81.5
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 0.0e+00 1493.4 979 79.4
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 0.0e+00 1446.0 958 77.6
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 0.0e+00 1429.5 978 76.7
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 0.0e+00 1425.6 978 76.4
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 0.0e+00 1420.6 978 76.3
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 0.0e+00 1303.1 972 72.5
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 0.0e+00 1290.0 972 72.0
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 0.0e+00 1286.9 972 71.8
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 4.0e-307 1058.1 953 60.2
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 4.4e-306 1054.7 980 59.3
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 5.7e-306 1054.3 972 59.3
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.4e-304 1049.7 977 58.9
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.7e-302 1042.7 968 59.9
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.1e-296 1023.5 980 58.0
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.6e-295 1019.6 971 58.9
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 3.9e-286 988.4 913 59.4
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 4.3e-285 984.9 979 56.2
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 7.3e-285 984.2 978 56.1
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.1e-280 968.4 980 55.3
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 5.4e-280 968.0 972 54.7
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 8.6e-278 960.7 951 55.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.6e-276 956.4 980 54.8
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.8e-276 955.7 975 55.0
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.3e-273 946.8 975 54.4
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.2e-271 940.3 941 57.1
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 4.6e-271 938.3 970 54.1
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 8.6e-270 934.1 1040 52.1
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.8e-267 926.4 978 54.8
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.4e-267 926.0 936 55.1
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 7.6e-266 921.0 954 54.2
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.8e-265 918.7 1010 52.0
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.9e-264 916.4 910 56.3
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 3.2e-264 915.6 976 52.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 4.2e-264 915.2 940 54.4
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 9.2e-264 914.1 972 54.1
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.6e-263 913.3 937 53.1
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 7.8e-263 911.0 969 54.3
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.9e-262 908.7 911 55.9
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 8.7e-262 907.5 937 52.9
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.5e-261 906.7 957 53.3
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.8e-260 902.5 958 52.9
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 3.6e-260 902.1 959 52.7
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.2e-260 901.4 1043 49.2
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 8.1e-260 901.0 957 52.6
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.1e-259 900.6 950 52.3
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 2.4e-259 899.4 940 52.9
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 5.2e-259 898.3 956 52.3
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 5.8e-258 894.8 822 59.2
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 7.6e-258 894.4 948 52.4
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.3e-257 893.6 966 52.2
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.4e-256 890.2 963 51.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 2.4e-256 889.4 950 52.9
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 4.6e-255 885.2 981 51.9
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 3.0e-254 882.5 978 50.4
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 7.3e-253 877.9 919 53.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 9.6e-253 877.5 947 51.7
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.3e-252 877.1 969 52.0
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.8e-252 875.2 983 51.8
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 6.2e-252 874.8 977 52.1
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 6.9e-251 871.3 965 51.1
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 2.2e-249 866.3 976 51.4
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 2.2e-249 866.3 976 51.4
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.2e-249 866.3 982 50.8
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 5.4e-248 861.7 943 51.0
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 1.6e-247 860.1 988 50.3
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.7e-247 859.4 842 56.9
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.0e-246 857.4 981 50.7
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.3e-246 857.1 975 50.5
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.8e-246 856.7 980 50.1
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 8.1e-244 847.8 968 51.2
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.4e-243 847.0 997 49.2
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 2.4e-243 846.3 976 50.1
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 7.6e-242 841.3 983 49.7
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.9e-240 836.6 970 50.5
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.6e-239 833.6 979 50.4
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.9e-237 826.6 967 49.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 4.3e-237 825.5 962 50.3
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.4e-235 819.7 960 51.1
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 7.6e-234 814.7 955 50.7
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 5.5e-232 808.5 970 49.8
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.6e-231 807.0 950 50.6
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 8.7e-230 801.2 965 50.1
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 5.7e-229 798.5 886 49.8
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 9.7e-229 797.7 973 48.5
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 8.2e-228 794.7 964 49.8
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.1e-227 794.3 966 50.3
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 9.0e-227 791.2 984 49.2
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 4.5e-226 788.9 988 49.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 3.8e-225 785.8 955 49.1
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.6e-223 780.4 982 48.3
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.7e-220 770.4 691 58.9
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 2.8e-220 769.6 688 59.6
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 6.3e-220 768.5 986 47.2
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 5.5e-216 755.4 930 47.7
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 3.9e-214 749.2 1001 46.3
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 8.2e-212 741.5 688 57.0
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 5.0e-209 732.3 806 52.4
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 4.7e-207 725.7 987 45.9
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 5.3e-203 712.2 706 55.4
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.0e-193 681.4 596 59.7
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.5e-193 678.3 712 53.4
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.7e-191 673.3 704 52.3
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.8e-183 646.7 970 43.6
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 4.5e-178 629.4 971 41.5
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 3.9e-177 626.3 675 51.4
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.5e-176 624.4 960 42.1
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.6e-167 594.3 962 40.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.4e-166 591.3 463 66.1
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.9e-163 580.9 678 50.3
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 5.8e-157 559.3 535 54.4
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.2e-155 553.5 718 46.7
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.2e-154 551.6 444 64.4
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.6e-151 541.2 720 44.6
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 3.2e-147 526.9 670 44.8
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.5e-144 517.3 973 38.7
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.5e-141 508.1 702 43.9
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 2.7e-138 497.3 638 44.5
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.3e-132 478.4 738 43.1
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 4.3e-128 463.4 855 37.8
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 3.0e-121 440.7 517 50.1
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.1e-119 434.5 543 48.8
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.7e-116 424.9 689 39.3
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 9.4e-99 365.9 999 30.9
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 4.5e-93 347.1 485 41.9
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.5e-91 341.3 286 64.0
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 9.4e-91 339.3 447 45.9
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 6.3e-79 300.1 275 60.4
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-74 285.4 206 67.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 3.0e-65 254.6 253 52.2
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 3.0e-65 254.6 204 62.7
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.6e-61 240.7 181 65.2
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 7.8e-61 240.0 234 56.4
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.5e-59 235.0 244 56.1
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.1e-51 209.5 166 64.5
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 3.3e-51 208.0 132 75.0
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.1e-46 190.3 132 68.2
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 2.1e-42 178.7 293 42.0
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 2.3e-41 175.3 310 38.7
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.1e-38 166.4 289 40.8
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 4.6e-37 161.0 114 64.0
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 8.4e-31 140.2 177 43.5
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 3.3e-27 128.3 176 46.0
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 2.0e-24 119.0 528 25.4
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.2e-23 115.5 353 30.0
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.4e-22 112.8 80 65.0
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 9.0e-17 93.6 79 50.6
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 6.0e-13 80.9 548 23.5
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.3e-10 73.2 69 56.5


User provided reference genes

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