Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 0.0e+00 1079.7 567 100.0
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 2.9e-273 944.9 572 85.1
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.7e-257 892.5 576 83.7
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.2e-256 888.3 573 83.9
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 2.6e-250 868.6 578 78.0
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 6.5e-201 704.5 576 66.8
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.2e-191 673.7 605 62.8
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 3.6e-191 672.2 606 62.9
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 7.7e-186 654.4 580 60.3
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 3.3e-184 649.0 603 63.2
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.6e-183 646.7 534 63.5
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 5.7e-181 638.3 611 58.4
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 2.7e-178 629.4 611 58.3
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.4e-174 617.1 540 61.9
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 9.5e-168 594.3 573 56.9
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 3.7e-164 582.4 634 50.6
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 6.4e-164 581.6 608 56.6
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.1e-160 570.9 598 57.0
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 5.6e-160 568.5 594 54.5
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 7.3e-160 568.2 606 52.8
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.6e-159 567.0 546 56.0
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.6e-159 567.0 546 56.0
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 6.2e-159 565.1 582 57.4
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 4.4e-157 558.9 507 61.1
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 5.4e-155 552.0 534 54.9
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 9.2e-155 551.2 656 50.2
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 2.7e-154 549.7 552 54.7
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 2.3e-153 546.6 569 54.5
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 6.6e-153 545.0 628 53.8
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.9e-152 543.5 580 52.4
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.6e-152 542.0 657 50.2
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.6e-152 541.2 654 49.7
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 2.1e-151 540.0 656 49.7
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 2.1e-151 540.0 657 47.6
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 1.2e-149 534.3 558 53.6
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 7.6e-149 531.6 579 53.2
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 9.9e-149 531.2 623 49.6
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 3.8e-148 529.3 678 47.2
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 2.4e-147 526.6 728 45.5
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.0e-145 521.2 742 43.8
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 8.7e-145 518.1 652 48.2
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.1e-144 517.7 591 51.3
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 1.6e-143 513.8 589 50.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 8.1e-143 511.5 603 50.6
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.1e-142 511.1 634 49.2
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.8e-142 510.4 643 46.8
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.2e-141 507.7 698 44.8
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 3.4e-141 506.1 649 47.1
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 4.4e-141 505.8 637 48.4
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 9.9e-141 504.6 631 47.5
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 1.7e-140 503.8 623 49.0
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.7e-140 503.8 658 46.7
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.2e-140 503.4 709 44.7
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 3.8e-140 502.7 621 48.1
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.9e-140 502.3 541 51.2
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.2e-139 499.6 655 47.3
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 7.1e-139 498.4 593 51.6
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 9.3e-139 498.0 581 49.2
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.2e-138 497.7 607 48.4
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.2e-138 497.7 769 41.7
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 2.1e-138 496.9 563 48.8
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.0e-137 494.6 704 44.5
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.3e-137 493.4 634 47.0
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 3.9e-137 492.7 591 48.4
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.1e-135 486.9 577 48.0
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 2.8e-135 486.5 736 41.6
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 1.1e-134 484.6 617 48.0
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.1e-134 484.6 642 46.3
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 4.0e-134 482.6 623 46.5
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 4.0e-134 482.6 629 46.6
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 1.2e-133 481.1 633 45.8
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 9.9e-133 478.0 624 46.5
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 9.9e-133 478.0 744 44.0
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 1.7e-132 477.2 625 45.9
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 2.2e-132 476.9 626 45.4
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 8.4e-132 474.9 532 49.8
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 4.2e-131 472.6 439 59.5
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.4e-131 472.2 580 48.1
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.6e-130 470.7 565 47.6
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 1.8e-129 467.2 698 43.8
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 3.9e-129 466.1 738 40.5
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 8.7e-129 464.9 667 47.4
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.5e-128 464.2 658 45.3
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.9e-128 463.8 689 42.5
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 3.7e-127 459.5 604 46.2
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 8.1e-127 458.4 599 45.2
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 1.8e-126 457.2 729 41.3
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.8e-126 457.2 556 46.8
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.5e-125 454.1 662 43.5
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 8.2e-119 431.8 746 37.9
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 9.0e-118 428.3 639 44.3
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 5.5e-115 419.1 423 56.0
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 2.7e-114 416.8 677 39.9
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 8.7e-113 411.8 855 34.5
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.2e-108 397.1 515 45.8
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 5.1e-105 386.0 734 36.6
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 2.4e-102 377.1 545 42.9
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 6.9e-102 375.6 283 69.6
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.9e-101 372.5 202 89.6
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 9.4e-99 365.2 453 48.8
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 9.7e-96 355.1 453 47.9
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 3.5e-93 346.7 234 75.2
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.2e-85 321.6 210 79.5
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 2.3e-81 307.4 259 59.5
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 9.1e-78 295.4 472 38.8
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-75 288.5 466 38.4
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.7e-71 274.6 703 31.2
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.3e-71 272.3 465 37.0
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 2.0e-69 267.7 221 61.1
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 2.3e-68 264.2 197 68.0
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.1e-67 261.9 718 29.4
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.5e-67 261.5 555 34.2
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 4.4e-64 250.0 181 69.6
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.5e-59 234.2 228 58.8
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.8e-50 204.1 223 52.0
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.8e-48 195.7 139 72.7
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 3.2e-46 190.7 242 49.6
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 9.5e-43 179.1 195 43.1
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 6.8e-33 146.4 147 54.4
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-30 138.3 236 38.6
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 2.4e-30 137.9 205 38.0
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 4.2e-30 137.1 232 37.5
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 5.1e-28 130.2 312 33.3
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 1.1e-27 129.0 201 39.3
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 1.1e-27 129.0 201 39.3
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 7.6e-24 116.3 100 60.0
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 7.1e-22 109.8 152 41.4
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 6.6e-20 103.2 142 42.3
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 2.5e-19 101.3 80 62.5
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.6e-19 100.1 59 78.0
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.7e-15 88.6 134 41.8
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.6e-13 82.0 107 43.9
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.0e-12 77.8 49 73.5
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 3.3e-11 74.3 48 72.9
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.3e-11 73.9 61 57.4
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.6e-10 72.0 76 51.3
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.8e-10 71.2 117 40.2
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.8e-10 71.2 117 40.2
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 6.2e-10 70.1 115 36.5
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 9.0e-09 66.2 49 69.4
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 1.5e-08 65.5 137 34.3
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 3.4e-08 64.3 158 29.7
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 4.5e-08 63.9 81 33.3
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.7e-07 62.0 122 36.1
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 2.9e-07 61.2 61 49.2
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 6.5e-07 60.1 118 34.7
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 6.5e-07 60.1 122 32.0
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.1e-06 59.3 160 26.2
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.9e-06 58.5 239 25.5
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.5e-06 58.2 117 33.3
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 3.2e-06 57.8 112 39.3
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 3.2e-06 57.8 112 39.3
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.2e-06 57.4 122 33.6
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 4.2e-06 57.4 160 28.8
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 5.5e-06 57.0 122 32.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 7.1e-06 56.6 122 32.8
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 7.1e-06 56.6 122 32.8
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 7.1e-06 56.6 142 31.0
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 9.3e-06 56.2 117 32.5
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 9.3e-06 56.2 127 31.5


User provided reference genes

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