Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.2e-138 496.5 253 100.0
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 9.2e-131 470.3 282 86.5
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.0e-129 466.8 282 85.8
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.0e-129 466.8 282 86.2
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.8e-127 458.8 282 84.4
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 2.8e-127 458.8 282 84.4
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.8e-126 456.1 282 83.3
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 1.7e-124 449.5 282 80.5
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 3.8e-124 448.4 282 81.2
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 8.4e-124 447.2 280 81.4
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 8.4e-124 447.2 282 81.2
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 9.3e-123 443.7 282 81.9
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 1.2e-122 443.4 282 79.8
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 2.7e-122 442.2 282 79.1
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.5e-122 441.8 282 79.8
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 3.9e-121 438.3 280 79.3
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.9e-120 436.0 282 78.4
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 2.5e-120 435.6 282 78.0
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 3.3e-120 435.3 282 77.7
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 3.3e-120 435.3 282 79.4
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 7.3e-120 434.1 281 78.6
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 7.3e-120 434.1 282 78.4
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.6e-119 433.0 282 78.7
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.8e-119 431.4 282 78.0
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.1e-119 430.6 282 78.4
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 1.1e-118 430.3 282 77.7
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 1.8e-118 429.5 282 77.3
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 1.8e-118 429.5 282 76.6
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 2.4e-118 429.1 282 77.3
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 5.3e-118 427.9 282 77.0
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 1.2e-117 426.8 282 77.0
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 2.0e-117 426.0 282 75.9
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 2.0e-117 426.0 282 77.7
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 2.6e-117 425.6 282 77.3
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 2.6e-117 425.6 282 75.9
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 4.5e-117 424.9 293 74.4
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 7.6e-117 424.1 282 76.2
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 9.9e-117 423.7 282 76.6
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 9.9e-117 423.7 281 75.4
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 3.8e-116 421.8 282 75.2
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 3.8e-116 421.8 282 75.5
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 4.9e-116 421.4 282 76.2
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 6.4e-116 421.0 281 75.4
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 8.4e-116 420.6 282 74.8
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-115 420.2 275 80.0
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.1e-115 420.2 282 75.5
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.1e-115 420.2 282 75.9
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 1.9e-115 419.5 282 74.5
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 9.3e-115 417.2 258 84.9
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 9.3e-115 417.2 282 74.1
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 1.2e-114 416.8 282 74.5
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 4.6e-114 414.8 282 74.8
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 7.9e-114 414.1 282 73.8
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 1.0e-113 413.7 282 73.4
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 1.0e-113 413.7 282 74.8
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 2.3e-113 412.5 282 74.1
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.0e-113 412.1 269 76.6
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.9e-113 411.8 282 74.8
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 3.9e-113 411.8 282 73.0
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.1e-113 411.4 284 75.4
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 2.5e-112 409.1 283 74.9
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.5e-112 409.1 286 72.4
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 5.6e-112 407.9 282 73.8
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 1.3e-111 406.8 282 73.0
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 3.7e-111 405.2 269 76.2
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 3.7e-111 405.2 282 73.4
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 3.7e-111 405.2 275 74.5
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 4.8e-111 404.8 286 73.1
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 6.2e-111 404.4 282 73.0
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.1e-110 403.7 277 75.1
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.1e-110 403.7 283 73.1
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 1.8e-110 402.9 281 72.2
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 4.0e-110 401.7 290 72.1
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 5.3e-110 401.4 286 72.7
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 6.9e-110 401.0 283 72.4
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 6.9e-110 401.0 278 73.7
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 9.0e-110 400.6 283 73.1
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 9.0e-110 400.6 286 72.7
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 2.0e-109 399.4 341 62.8
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.6e-109 399.1 286 72.4
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.4e-109 398.7 283 71.4
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 5.8e-109 397.9 266 77.4
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 9.9e-109 397.1 282 72.0
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.2e-108 396.0 283 72.1
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 2.9e-108 395.6 283 72.4
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 4.9e-108 394.8 286 71.7
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 4.9e-108 394.8 286 71.7
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 6.4e-108 394.4 286 71.3
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 8.4e-108 394.0 283 71.7
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 8.4e-108 394.0 286 70.6
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 1.1e-107 393.7 278 72.3
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 1.4e-107 393.3 282 70.9
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.4e-107 393.3 286 70.6
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 1.9e-107 392.9 286 71.3
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 3.2e-107 392.1 282 70.6
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 4.2e-107 391.7 316 65.8
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 5.5e-107 391.3 266 75.6
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 7.1e-107 391.0 285 73.0
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 7.1e-107 391.0 288 70.1
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 1.6e-106 389.8 282 70.2
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 2.1e-106 389.4 286 70.6
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 3.5e-106 388.7 266 75.2
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.8e-105 386.3 286 70.3
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 2.3e-105 386.0 281 70.1
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 6.7e-105 384.4 282 69.1
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 6.7e-105 384.4 268 73.5
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.9e-104 382.9 325 62.8
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 4.3e-104 381.7 278 73.0
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.6e-104 381.3 267 73.4
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 6.2e-103 377.9 282 69.1
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 2.4e-102 375.9 276 69.9
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 4.0e-102 375.2 295 67.8
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.2e-101 373.6 260 73.8
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 1.2e-101 373.6 266 71.4
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.5e-101 373.2 286 67.5
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 7.6e-101 370.9 240 76.2
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 7.6e-101 370.9 313 63.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.3e-100 370.2 272 71.0
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.3e-100 370.2 279 68.5
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 6.5e-100 367.9 282 69.1
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 6.5e-100 367.9 282 69.1
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 8.4e-100 367.5 286 66.8
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 2.5e-99 365.9 266 69.5
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 9.3e-99 364.0 297 65.7
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.2e-98 363.6 282 64.5
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.2e-98 363.6 282 64.5
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.9e-96 356.3 281 66.5
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 3.7e-95 352.1 284 63.7
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 6.3e-95 351.3 272 68.4
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.5e-93 346.7 250 71.2
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 2.2e-92 342.8 276 67.0
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.6e-90 336.7 247 68.8
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 6.7e-89 331.3 302 61.9
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.9e-88 329.7 266 63.9
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 1.6e-87 326.6 231 70.6
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 1.8e-86 323.2 283 62.5
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 6.9e-86 321.2 283 56.5
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.6e-82 310.1 213 73.7
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 3.0e-81 305.8 247 67.2
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.7e-81 304.7 258 65.1
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 2.0e-80 303.1 213 71.4
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.3e-79 300.4 279 57.3
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 2.2e-79 299.7 223 69.1
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 3.6e-74 282.3 267 55.8
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 3.7e-71 272.3 283 52.3
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 8.0e-66 254.6 281 53.4
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.2e-61 240.7 239 56.1
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 1.0e-57 227.6 213 52.6
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 9.1e-54 214.5 312 46.2
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.9e-52 209.5 265 51.7
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.5e-51 206.5 199 60.8
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.4e-46 190.7 151 66.2
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 8.9e-41 171.4 173 52.0
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 4.4e-40 169.1 173 53.2
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 9.8e-40 167.9 250 43.2
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 7.3e-35 151.8 172 51.7
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 6.4e-31 138.7 120 56.7
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.8e-29 131.7 261 41.4
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.3e-28 131.0 83 69.9
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 1.5e-27 127.5 259 40.9
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.9e-27 127.1 122 54.1
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.2e-24 117.9 175 44.6
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 8.3e-23 111.7 66 86.4
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.4e-22 110.2 120 52.5
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 2.1e-18 97.1 220 30.0
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.2e-17 92.4 111 48.6
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.9e-15 85.9 52 86.5
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.7e-13 80.1 47 85.1
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.8e-08 62.4 94 41.5


User provided reference genes

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