Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0404 Durio zibethinus HOM05D007048 ORTHO05D008811 9.9e-66 253.4 141 100.0
Thecc.03G140000 Theobroma cacao HOM05D007048 ORTHO05D008811 1.1e-53 213.4 136 86.8
Gohir.D07G051200 Gossypium hirsutum HOM05D007048 ORTHO05D008811 1.5e-50 203.0 136 81.6
Gorai.001G054300 Gossypium raimondii HOM05D007048 ORTHO05D008811 1.5e-50 203.0 136 81.6
Gohir.A07G046900 Gossypium hirsutum HOM05D007048 ORTHO05D008811 1.3e-49 199.9 136 80.1
Haze_07101 Corylus avellana HOM05D007048 ORTHO05D008811 1.1e-48 196.8 128 82.8
Cfa018710 Carpinus fangiana HOM05D007048 ORTHO05D008811 1.6e-47 193.0 117 86.3
Dinv23221 Davidia involucrata HOM05D007048 ORTHO05D008811 8.7e-46 187.2 126 78.6
TAR475G0007 Trochodendron aralioides HOM05D007048 ORTHO05D008811 5.6e-45 184.5 128 78.9
TAR629G1913 Trochodendron aralioides HOM05D007048 ORTHO05D008811 5.6e-45 184.5 128 78.9
Actinidia18303 Actinidia chinensis HOM05D007048 ORTHO05D008811 7.4e-45 184.1 128 75.8
RcHm_v2.0_Chr7g0188741 Rosa chinensis HOM05D007048 ORTHO05D008811 9.6e-45 183.7 126 76.2
Migut.D01184 Erythranthe guttata HOM05D007048 ORTHO05D008811 2.1e-44 182.6 128 73.4
Manes.14G045100 Manihot esculenta HOM05D007048 ORTHO05D008811 2.8e-44 182.2 128 75.8
Carub.0008s1094 Capsella rubella HOM05D007048 ORTHO05D008811 3.7e-44 181.8 139 69.8
SalBow1G8421 Salvia bowleyana HOM05D007048 ORTHO05D008811 4.8e-44 181.4 128 74.2
Prupe.5G142300 Prunus persica HOM05D007048 ORTHO05D008811 8.1e-44 180.6 126 75.4
AL8G25120 Arabidopsis lyrata HOM05D007048 ORTHO05D008811 1.1e-43 180.3 135 68.9
Sabra15G0126100 Salix brachista HOM05D007048 ORTHO05D008811 1.4e-43 179.9 128 74.2
QL10p000556 Quercus lobata HOM05D007048 ORTHO05D008811 1.8e-43 179.5 116 82.8
Cpa.g.sc13.165 Carica papaya HOM05D007048 ORTHO05D008811 4.0e-43 178.3 127 75.6
CiPaw.11G000300 Carya illinoinensis HOM05D007048 ORTHO05D008811 4.0e-43 178.3 135 74.1
Ciclev10033023m.g Citrus clementina HOM05D007048 ORTHO05D008811 4.0e-43 178.3 133 72.2
MD06G1131300 Malus domestica HOM05D007048 ORTHO05D008811 4.0e-43 178.3 126 75.4
Sp6g13100 Schrenkiella parvula HOM05D007048 ORTHO05D008811 4.0e-43 178.3 135 67.4
AT5G50930 Arabidopsis thaliana HOM05D007048 ORTHO05D008811 5.3e-43 177.9 135 68.9
Thhalv10014960m.g Eutrema salsugineum HOM05D007048 ORTHO05D008811 5.3e-43 177.9 135 67.4
Potri.015G105900 Populus trichocarpa HOM05D007048 ORTHO05D008811 5.3e-43 177.9 128 74.2
Rhsim08G0196900 Rhododendron simsii HOM05D007048 ORTHO05D008811 9.0e-43 177.2 123 77.2
GSVIVG01008645001 Vitis vinifera HOM05D007048 ORTHO05D008811 2.0e-42 176.0 134 73.1
FAN18G3224 Fragaria x ananassa HOM05D007048 ORTHO05D008811 2.6e-42 175.6 126 73.0
CANSAT56G3502 Cannabis sativa HOM05D007048 ORTHO05D008811 3.4e-42 175.3 124 76.6
CANSAT56G3230 Cannabis sativa HOM05D007048 ORTHO05D008811 4.5e-42 174.9 124 76.6
vmacro19180 Vaccinium macrocarpon HOM05D007048 ORTHO05D008811 5.8e-42 174.5 133 73.7
A03p16450 Brassica napus HOM05D007048 ORTHO05D008811 7.6e-42 174.1 129 70.5
BraA03t10934Z Brassica rapa HOM05D007048 ORTHO05D008811 7.6e-42 174.1 129 70.5
Ah.02g114610 Amaranthus hybridus HOM05D007048 ORTHO05D008811 1.0e-41 173.7 135 68.9
TWI39G0039 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 1.0e-41 173.7 132 72.0
Atru.chr6.1912 Acer truncatum HOM05D007048 ORTHO05D008811 1.7e-41 172.9 133 66.2
BcaNung07188 Brassica carinata HOM05D007048 ORTHO05D008811 2.2e-41 172.6 129 69.8
C03p19340 Brassica napus HOM05D007048 ORTHO05D008811 2.2e-41 172.6 129 69.8
BolC3t14320H Brassica oleracea HOM05D007048 ORTHO05D008811 2.2e-41 172.6 129 69.8
TWI14G0368 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 2.2e-41 172.6 129 72.1
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 2.9e-41 172.2 116 75.0
Hund10045 Selenicereus undatus HOM05D007048 ORTHO05D008811 2.9e-41 172.2 137 68.6
CARHR257290 Cardamine hirsuta HOM05D007048 ORTHO05D008811 4.9e-41 171.4 137 66.4
Aa31LG3G7430 Aethionema arabicum HOM05D007048 ORTHO05D008811 1.1e-40 170.2 132 66.7
EL10Ac5g11295 Beta vulgaris HOM05D007048 ORTHO05D008811 1.4e-40 169.9 136 71.3
CsaV3_1G009910 Cucumis sativus L. HOM05D007048 ORTHO05D008811 1.4e-40 169.9 119 73.9
MELO3C035737.2 Cucumis melo HOM05D007048 ORTHO05D008811 1.9e-40 169.5 119 73.9
Hma1.2p1_0664F.1_g199000 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.5e-40 169.1 118 73.7
Cc04_g05890 Coffea canephora HOM05D007048 ORTHO05D008811 4.2e-40 168.3 131 65.6
FAN04G3007 Fragaria x ananassa HOM05D007048 ORTHO05D008811 5.5e-40 167.9 117 74.4
Peaxi162Scf01168g00014 Petunia axillaris HOM05D007048 ORTHO05D008811 1.6e-39 166.4 130 67.7
Sc22g0003410 Simmondsia chinensis HOM05D007048 ORTHO05D008811 3.5e-39 165.2 114 73.7
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 4.6e-39 164.9 122 70.5
Aqoxy3G01543 Aquilegia oxysepala HOM05D007048 ORTHO05D008811 6.0e-39 164.5 114 71.1
Nitab4.5_0002584g0070 Nicotiana tabacum HOM05D007048 ORTHO05D008811 6.0e-39 164.5 138 66.7
Nitab4.5_0003119g0030 Nicotiana tabacum HOM05D007048 ORTHO05D008811 6.0e-39 164.5 138 65.9
PGSC0003DMG400018389 Solanum tuberosum HOM05D007048 ORTHO05D008811 6.0e-39 164.5 122 70.5
ClCG03G004020 Citrullus lanatus HOM05D007048 ORTHO05D008811 1.0e-38 163.7 128 69.5
PSO339G2722 Papaver somniferum HOM05D007048 ORTHO05D008811 3.9e-38 161.8 132 64.4
CAN.G521.6 Capsicum annuum HOM05D007048 ORTHO05D008811 5.1e-38 161.4 128 66.4
PSO384G0987 Papaver somniferum HOM05D007048 ORTHO05D008811 5.1e-38 161.4 132 64.4
Solyc07g054400.3 Solanum lycopersicum HOM05D007048 ORTHO05D008811 5.1e-38 161.4 122 69.7
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.5e-37 159.8 125 66.4
Sed0017197 Sechium edule HOM05D007048 ORTHO05D008811 5.7e-37 157.9 112 72.3
arahy.Tifrunner.gnm1.ann1.QNIR3T Arachis hypogaea HOM05D007048 ORTHO05D008811 7.4e-37 157.5 126 64.3
HanXRQChr10g0316061 Helianthus annuus HOM05D007048 ORTHO05D008811 2.8e-36 155.6 129 65.1
MBI07_g41901_MAGBIO Magnolia biondii HOM05D007048 ORTHO05D008811 2.8e-36 155.6 121 66.9
SGA_v2.0_scaffold40G15679 Striga asiatica HOM05D007048 ORTHO05D008811 4.8e-36 154.8 160 58.8
Glyma.04G201000 Glycine max HOM05D007048 ORTHO05D008811 3.1e-35 152.1 132 62.1
Lj1g0016164 Lotus japonicus HOM05D007048 ORTHO05D008811 4.1e-35 151.8 113 69.0
Lsat_1_v5_gn_5_10141 Lactuca sativa HOM05D007048 ORTHO05D008811 5.3e-35 151.4 142 62.0
arahy.Tifrunner.gnm1.ann1.8FCI62 Arachis hypogaea HOM05D007048 ORTHO05D008811 9.0e-35 150.6 113 68.1
PGR031G3072 Punica granatum HOM05D007048 ORTHO05D008811 1.2e-34 150.2 119 64.7
Medtr3g098660 Medicago truncatula HOM05D007048 ORTHO05D008811 1.5e-34 149.8 108 69.4
VMungo1309G1627 Vigna mungo HOM05D007048 ORTHO05D008811 4.5e-34 148.3 112 67.0
Phvul.009G161500 Phaseolus vulgaris HOM05D007048 ORTHO05D008811 5.9e-34 147.9 129 61.2
PGR031G3844 Punica granatum HOM05D007048 ORTHO05D008811 5.9e-34 147.9 119 63.9
PGR031G2395 Punica granatum HOM05D007048 ORTHO05D008811 1.7e-33 146.4 119 63.9
Glyma.06G164400 Glycine max HOM05D007048 ORTHO05D008811 2.9e-33 145.6 132 60.6
unitig_747.g21321 Utricularia gibba HOM05D007048 ORTHO05D008811 3.8e-33 145.2 159 55.3
TPR.G21584 Trifolium pratense HOM05D007048 ORTHO05D008811 6.5e-33 144.4 108 68.5
Eucgr.K02194 Eucalyptus grandis HOM05D007048 ORTHO05D008811 8.5e-33 144.1 139 58.3
Psat5g055240 Pisum sativum HOM05D007048 ORTHO05D008811 4.2e-32 141.7 118 64.4
arahy.Tifrunner.gnm1.ann1.CS080T Arachis hypogaea HOM05D007048 ORTHO05D008811 7.2e-32 141.0 123 62.6
Lalb_Chr08g0237541 Lupinus albus HOM05D007048 ORTHO05D008811 7.2e-32 141.0 129 62.0
Os04g0397700 Oryza sativa ssp. japonica HOM05D007048 ORTHO05D008811 7.2e-32 141.0 135 56.3
arahy.Tifrunner.gnm1.ann1.DD5QTF Arachis hypogaea HOM05D007048 ORTHO05D008811 9.3e-32 140.6 123 62.6
FvH4_5g09450 Fragaria vesca HOM05D007048 ORTHO05D008811 1.3e-30 136.7 90 75.6
MD14G1147700 Malus domestica HOM05D007048 ORTHO05D008811 1.3e-30 136.7 90 76.7
PGR044G0448 Punica granatum HOM05D007048 ORTHO05D008811 9.7e-29 130.6 122 59.8
AUR62009534 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.2e-28 129.4 90 74.4
Hma1.2p1_0664F.1_g198980 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.8e-28 129.0 94 72.3
Hma1.2p1_0664F.1_g198990 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 2.8e-28 129.0 80 78.8
AUR62041697 Chenopodium quinoa HOM05D007048 ORTHO05D008811 3.7e-28 128.6 90 74.4
AUR62044083 Chenopodium quinoa HOM05D007048 ORTHO05D008811 3.7e-28 128.6 90 74.4
ATR0582G167 Amborella trichopoda HOM05D007048 ORTHO05D008811 1.0e-25 120.6 124 54.0
HPP92_008245 Vanilla planifolia HOM05D007048 ORTHO05D008811 3.8e-25 118.6 145 51.0
Nn3g16280 Nelumbo nucifera HOM05D007048 ORTHO05D008811 3.2e-24 115.5 89 67.4
CSS0012628 Camellia sinensis var. sinensis HOM05D007048 ORTHO05D008811 4.2e-24 115.2 70 84.3
BcaB01g01606 Brassica carinata HOM05D007048 ORTHO05D008811 7.2e-24 114.4 94 67.0
SEGI_10153 Sequoiadendron giganteum HOM05D007048 ORTHO05D008811 9.4e-24 114.0 133 50.4
CDE05G0753 Ceratophyllum demersum HOM05D000512 ORTHO05D000861 2.1e-23 112.8 88 64.8
Nn1g04900 Nelumbo nucifera HOM05D007048 ORTHO05D008811 1.8e-22 109.8 79 72.2
FAN13G1437 Fragaria x ananassa HOM05D007048 ORTHO05D008811 8.8e-22 107.5 72 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2725 Anthoceros agrestis HOM05D007048 ORTHO05D008811 5.3e-19 98.2 119 46.2
Zm00001eb084850 Zea mays HOM05D007048 ORTHO05D008811 1.0e-17 94.0 67 67.2
BcaB05g23641 Brassica carinata HOM05D007048 ORTHO05D008811 1.3e-17 93.6 68 73.5
COL.COLO4_37252 Corchorus olitorius HOM05D007048 ORTHO05D008811 2.1e-15 86.3 96 57.3
Pp3c2_1780 Physcomitrium patens HOM05D007048 ORTHO05D008811 3.0e-14 82.4 99 45.5
Mapoly0109s0028 Marchantia polymorpha HOM05D007048 ORTHO05D008811 6.3e-12 74.7 102 41.2
RcHm_v2.0_Chr5g0067941 Rosa chinensis HOM05D052544 ORTHO05D008811 1.8e-11 73.2 63 63.5
Oeu009260.1 Olea europaea HOM05D007048 ORTHO05D008811 4.2e-08 62.0 39 76.9
ECA233G3375 Erigeron canadensis HOM05D007048 ORTHO05D008811 7.2e-08 61.2 96 36.5
ECA246G4512 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.4e-06 57.0 57 56.1


User provided reference genes

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