Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 1.7e-117 426.0 219 100.0
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 7.3e-100 367.5 225 84.9
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 9.2e-95 350.5 224 81.7
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.2e-94 350.1 224 82.6
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 1.3e-93 346.7 226 81.9
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.3e-92 341.7 224 80.8
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 4.3e-92 341.7 225 81.3
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 1.6e-86 323.2 223 76.7
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 8.1e-83 310.8 221 73.8
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 8.1e-83 310.8 223 72.6
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 4.0e-82 308.5 222 71.6
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 9.0e-82 307.4 222 70.7
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.0e-81 306.2 221 71.5
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 9.3e-79 297.4 222 70.3
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.1e-77 291.6 204 75.5
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 5.1e-77 291.6 205 75.6
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 8.7e-77 290.8 227 70.0
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 8.7e-77 290.8 227 70.0
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.1e-76 290.4 221 71.0
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.9e-76 289.7 204 75.5
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 7.4e-76 287.7 203 73.9
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 7.4e-76 287.7 222 66.7
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 1.1e-74 283.9 243 66.3
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.1e-74 283.9 193 75.1
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 7.6e-73 277.7 226 66.4
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 7.6e-73 277.7 234 66.2
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 7.6e-73 277.7 224 69.6
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.3e-72 276.9 220 66.8
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 6.4e-72 274.6 224 67.4
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 1.6e-70 270.0 224 66.1
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 3.5e-70 268.9 241 64.3
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 4.6e-70 268.5 230 63.0
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 4.6e-70 268.5 224 65.6
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 6.0e-70 268.1 225 68.9
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 6.0e-70 268.1 211 68.7
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 3.9e-69 265.4 233 62.7
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 6.7e-69 264.6 225 64.9
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 6.7e-69 264.6 240 60.8
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 8.7e-69 264.2 224 62.9
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 1.1e-68 263.8 222 64.0
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 3.3e-68 262.3 232 62.9
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 9.6e-68 260.8 229 60.7
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 1.3e-67 260.4 158 84.2
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.1e-66 257.3 225 61.8
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 5.3e-66 255.0 251 57.4
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 2.6e-65 252.7 229 60.3
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 3.4e-65 252.3 222 62.2
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 4.5e-65 251.9 234 59.8
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 7.6e-65 251.1 220 62.3
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.3e-64 250.4 227 59.9
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 2.2e-64 249.6 227 59.9
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 4.9e-64 248.4 207 63.3
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 8.4e-64 247.7 229 59.4
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 1.4e-63 246.9 230 61.7
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 1.9e-63 246.5 226 63.7
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.2e-63 245.7 227 59.9
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 3.2e-63 245.7 228 60.1
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 7.1e-63 244.6 231 60.2
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 7.1e-63 244.6 210 65.2
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 9.3e-63 244.2 225 58.7
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 9.3e-63 244.2 227 57.7
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.6e-62 243.4 227 60.8
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 2.1e-62 243.0 224 61.2
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 7.9e-62 241.1 234 56.0
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 1.3e-61 240.4 177 72.9
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 1.8e-61 240.0 225 58.7
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 2.3e-61 239.6 227 58.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 3.0e-61 239.2 226 58.0
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.1e-61 238.4 227 56.4
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 6.7e-61 238.0 214 61.7
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 6.7e-61 238.0 227 58.6
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 8.7e-61 237.7 228 57.5
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.1e-60 237.3 224 58.0
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 4.3e-60 235.3 221 60.2
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 9.6e-60 234.2 219 61.6
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 2.1e-59 233.0 224 58.9
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 4.8e-59 231.9 224 58.5
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 8.2e-59 231.1 219 54.8
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 5.3e-58 228.4 209 58.4
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 5.3e-58 228.4 184 63.6
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 6.9e-58 228.0 222 58.6
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 6.9e-58 228.0 222 58.6
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 9.0e-58 227.6 223 57.4
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 9.0e-58 227.6 244 55.3
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 1.2e-57 227.3 208 62.0
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.5e-57 226.9 219 56.6
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.5e-57 226.9 227 57.3
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.6e-57 226.1 224 57.1
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.4e-57 225.7 243 55.6
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 4.5e-57 225.3 224 57.1
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.9e-57 224.9 242 55.4
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 7.6e-57 224.6 237 54.0
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 2.2e-56 223.0 234 56.4
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 2.2e-56 223.0 225 55.6
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.9e-56 222.6 239 54.8
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.9e-56 222.6 235 51.5
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 3.8e-56 222.2 222 58.6
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 5.0e-56 221.9 241 55.6
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.0e-56 221.9 248 54.0
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 6.5e-56 221.5 219 54.8
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 8.5e-56 221.1 229 55.9
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 8.5e-56 221.1 225 56.4
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 1.1e-55 220.7 220 54.1
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 2.5e-55 219.5 218 57.8
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.5e-55 219.5 229 56.3
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 3.2e-55 219.2 219 55.3
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 9.3e-55 217.6 227 55.5
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 1.2e-54 217.2 217 54.4
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 2.1e-54 216.5 200 60.5
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 4.6e-54 215.3 152 69.1
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.3e-53 213.0 225 54.7
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 2.3e-53 213.0 224 54.0
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 2.3e-53 213.0 220 53.2
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 5.1e-53 211.8 224 54.0
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 5.1e-53 211.8 229 53.3
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 8.7e-53 211.1 230 52.2
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 1.5e-52 210.3 165 63.0
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 3.3e-52 209.1 253 49.0
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 9.7e-52 207.6 225 53.8
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 9.7e-52 207.6 232 53.0
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 1.3e-51 207.2 220 51.8
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 2.2e-51 206.5 224 54.9
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.4e-50 203.8 228 52.6
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 1.8e-50 203.4 151 66.2
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 4.1e-50 202.2 203 54.2
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 6.9e-50 201.4 132 76.5
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 9.1e-50 201.1 205 51.7
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 2.0e-49 199.9 138 70.3
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 4.6e-46 188.7 145 67.6
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 7.9e-46 188.0 224 48.2
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 7.9e-46 188.0 241 44.8
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.8e-43 179.5 221 49.3
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 5.9e-41 171.8 171 52.6
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.0e-40 171.0 144 63.9
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 2.9e-40 169.5 250 40.8
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 6.5e-40 168.3 226 45.6
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 3.3e-36 156.0 128 62.5
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 8.2e-35 151.4 208 45.7
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 1.8e-34 150.2 232 43.1
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 6.7e-29 131.7 163 49.7
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 9.7e-28 127.9 160 53.1
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 4.8e-27 125.6 186 45.7
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 9.1e-26 121.3 77 72.7
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 1.1e-23 114.4 205 34.6
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.4e-21 107.5 88 65.9
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.5e-20 104.0 87 64.4
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 9.8e-20 101.3 80 60.0
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.0e-16 91.3 80 63.8
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.3e-16 90.9 56 71.4
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.8e-14 83.2 74 54.1
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 2.8e-11 73.2 44 77.3
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.1e-10 71.2 50 64.0
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 9.2e-10 68.2 47 68.1
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 1.3e-08 64.3 91 48.4
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 5.0e-08 62.4 73 42.5
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 5.0e-08 62.4 103 38.8
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.3e-07 59.3 43 62.8
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 5.6e-07 58.9 142 34.5
FAN25G3581 Fragaria x ananassa HOM05D017504 ORTHO05D022678 6.1e-06 55.5 30 83.3
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 8.0e-06 55.1 152 33.6


User provided reference genes

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