Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 0.0e+00 1085.1 553 100.0
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 7.3e-282 973.4 537 92.0
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.9e-274 948.7 537 90.9
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 3.1e-272 941.4 537 89.6
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.5e-261 904.0 537 86.6
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 9.7e-258 893.3 537 86.4
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.8e-243 843.6 537 82.9
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.7e-241 839.3 537 82.7
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.3e-238 829.7 537 80.4
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.5e-234 816.2 534 80.0
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 7.4e-234 813.9 536 81.0
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.3e-233 813.1 536 79.5
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 3.5e-231 805.1 535 79.8
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 7.2e-229 797.3 509 81.7
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.2e-228 796.6 539 77.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.6e-228 795.0 535 76.6
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 6.1e-228 794.3 557 75.4
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 8.0e-228 793.9 497 82.7
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 2.6e-226 788.9 515 78.6
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.7e-225 786.2 537 79.0
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 2.8e-225 785.4 546 76.0
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 5.3e-224 781.2 509 78.6
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.2e-223 780.0 458 84.9
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.2e-223 780.0 508 79.1
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 3.5e-223 778.5 540 76.9
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 7.7e-223 777.3 507 79.3
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 1.0e-222 776.9 536 76.1
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 2.9e-222 775.4 546 74.7
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 3.8e-222 775.0 507 78.5
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.5e-222 773.9 458 84.3
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 8.5e-222 773.9 536 75.9
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.9e-221 772.7 450 85.1
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 2.5e-221 772.3 458 83.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 4.2e-221 771.5 546 73.8
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 5.5e-221 771.2 468 82.7
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 7.2e-221 770.8 532 77.1
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.2e-220 770.0 535 73.8
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.6e-220 769.6 436 87.4
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.6e-220 769.6 530 75.1
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 2.7e-220 768.8 465 82.6
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 6.1e-220 767.7 546 73.6
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 6.1e-220 767.7 501 79.2
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 8.0e-220 767.3 481 79.6
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 8.0e-220 767.3 436 87.4
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.8e-219 766.1 524 75.6
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 2.3e-219 765.8 534 74.7
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.3e-219 765.8 440 85.2
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 2.3e-219 765.8 436 85.3
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 3.0e-219 765.4 492 80.5
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 3.0e-219 765.4 488 79.9
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 8.8e-219 763.8 507 76.5
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 4.4e-218 761.5 478 79.1
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 5.7e-218 761.1 478 79.3
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.3e-217 760.0 536 75.4
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 4.1e-216 755.0 518 74.7
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 7.0e-216 754.2 434 86.2
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.1e-216 753.8 534 73.0
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 5.9e-215 751.1 517 75.2
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.0e-214 750.4 538 72.7
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.0e-214 750.4 480 80.0
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 3.8e-214 748.4 542 72.5
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.0e-214 748.0 448 83.0
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.5e-213 746.5 468 80.3
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.9e-213 746.1 539 73.1
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.5e-213 745.7 494 77.5
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 5.5e-213 744.6 480 78.5
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 5.5e-213 744.6 480 78.5
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 5.5e-213 744.6 529 73.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.2e-212 743.4 511 75.5
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.1e-212 742.7 536 71.8
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.8e-212 742.3 446 82.3
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.0e-212 740.7 494 76.9
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 3.0e-211 738.8 485 77.9
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 5.2e-211 738.0 466 80.0
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.2e-210 736.9 438 82.9
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.2e-210 736.9 472 78.6
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 3.4e-210 735.3 425 85.6
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.7e-210 734.6 472 78.6
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 9.8e-210 733.8 441 83.0
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.3e-209 733.4 532 71.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 2.8e-209 732.3 464 80.0
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 2.8e-209 732.3 577 68.8
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 8.3e-209 730.7 440 81.8
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 8.3e-209 730.7 504 74.4
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.1e-208 730.3 436 82.6
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.4e-208 729.9 548 70.1
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.2e-208 728.8 533 71.9
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 1.2e-207 726.9 538 70.8
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.7e-207 725.7 540 70.9
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 2.7e-207 725.7 472 76.3
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 7.8e-207 724.2 443 79.5
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 2.9e-206 722.2 436 82.1
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 3.9e-206 721.8 436 82.6
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 6.6e-206 721.1 478 75.1
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 7.3e-205 717.6 539 70.7
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 9.5e-205 717.2 536 70.9
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.2e-204 716.8 503 73.4
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 2.1e-204 716.1 539 70.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.3e-203 712.6 428 81.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 6.8e-203 711.1 424 82.5
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.2e-202 710.3 434 79.0
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 7.5e-202 707.6 436 78.4
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.2e-201 706.1 532 71.1
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.9e-201 705.7 424 81.8
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 5.4e-200 701.4 514 70.0
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 2.0e-199 699.5 455 76.3
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 7.8e-199 697.6 535 68.6
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.5e-197 693.3 498 70.7
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.5e-194 683.3 428 76.4
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 3.4e-194 682.2 448 77.2
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.9e-190 668.7 399 83.2
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.1e-188 662.9 408 80.1
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.1e-187 660.6 474 69.8
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.3e-185 653.7 398 86.7
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 6.0e-183 644.8 434 71.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.1e-182 641.7 455 69.9
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.3e-181 637.9 465 67.7
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 8.9e-179 630.9 456 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.8e-171 606.7 435 68.5
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.4e-168 597.0 369 79.1
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 3.2e-160 569.3 324 86.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 2.5e-149 533.1 413 70.0
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.2e-148 528.1 302 86.4
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.1e-147 527.7 435 60.9
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 8.4e-145 518.1 329 77.5
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 9.7e-141 504.6 299 84.9
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 9.0e-139 498.0 303 80.2
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.0e-137 494.6 432 59.0
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.7e-137 493.8 429 57.3
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-129 467.6 299 79.3
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 2.6e-125 453.4 275 79.3
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.1e-123 446.4 259 85.7
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 1.1e-120 438.0 424 55.9
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.7e-108 396.4 433 46.9
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 6.8e-102 375.6 242 79.3
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.6e-95 354.4 432 45.1
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.1e-80 305.1 175 82.3
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.0e-74 282.7 358 43.6
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.2e-58 231.9 133 83.5
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.4e-53 213.4 177 66.7
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 1.3e-49 201.8 124 83.1
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.0e-45 188.0 180 52.2
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-44 185.3 131 71.0
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.7e-44 184.9 120 71.7
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 6.4e-44 183.0 199 53.8
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 5.1e-41 173.3 90 88.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.5e-35 154.5 115 68.7
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 4.2e-35 153.7 144 59.0
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.5e-32 145.2 87 82.8
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 4.8e-31 140.2 137 56.9
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 3.1e-30 137.5 137 56.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 9.0e-30 136.0 201 44.8
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.5e-29 135.2 81 80.2
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 3.4e-29 134.0 140 52.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 5.0e-28 130.2 168 50.6
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 6.1e-26 123.2 133 54.9
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 6.1e-26 123.2 133 54.9
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 5.1e-25 120.2 78 71.8
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 4.5e-21 107.1 82 70.7
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 3.6e-18 97.4 258 29.5
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 5.1e-17 93.6 53 84.9


User provided reference genes

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