Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib008G0003 Durio zibethinus HOM05D004028 ORTHO05D004844 4.2e-164 581.3 284 100.0
Duzib016G0002 Durio zibethinus HOM05D004028 ORTHO05D004844 4.2e-164 581.3 284 100.0
Duzib235G0948 Durio zibethinus HOM05D004028 ORTHO05D004844 3.8e-109 398.7 373 59.2
Thecc.06G077900 Theobroma cacao HOM05D004028 ORTHO05D004844 7.5e-105 384.4 373 57.4
Gohir.D10G073400 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.6e-102 376.7 371 57.1
Gorai.011G079300 Gossypium raimondii HOM05D004028 ORTHO05D004844 1.7e-101 373.2 371 56.9
Gohir.A10G078100 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.6e-99 366.7 371 56.3
COL.COLO4_12855 Corchorus olitorius HOM05D004028 ORTHO05D004844 4.0e-98 362.1 373 55.8
Atru.chr1.3171 Acer truncatum HOM05D004028 ORTHO05D004844 1.5e-84 317.0 369 47.7
Ciclev10024778m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.8e-82 310.1 371 47.4
FAN14G3012 Fragaria x ananassa HOM05D004028 ORTHO05D004844 8.9e-82 307.8 328 50.3
Prupe.3G076900 Prunus persica HOM05D004028 ORTHO05D004844 1.2e-81 307.4 371 46.6
Dinv30549 Davidia involucrata HOM05D004028 ORTHO05D004844 3.4e-81 305.8 370 47.0
FAN09G1065 Fragaria x ananassa HOM05D004028 ORTHO05D004844 5.8e-81 305.1 371 46.1
FvH4_6g30720 Fragaria vesca HOM05D004028 ORTHO05D004844 8.3e-80 301.2 371 46.1
FAN02G4155 Fragaria x ananassa HOM05D004028 ORTHO05D004844 1.9e-79 300.1 371 45.8
FAN05G3865 Fragaria x ananassa HOM05D004028 ORTHO05D004844 5.4e-79 298.5 371 46.1
MD17G1201100 Malus domestica HOM05D004028 ORTHO05D004844 7.1e-79 298.1 371 45.6
QL05p026783 Quercus lobata HOM05D004028 ORTHO05D004844 6.0e-78 295.0 371 45.8
Eucgr.J03026 Eucalyptus grandis HOM05D004028 ORTHO05D004844 1.0e-77 294.3 371 45.3
RcHm_v2.0_Chr2g0137111 Rosa chinensis HOM05D004028 ORTHO05D004844 1.0e-77 294.3 371 44.5
Haze_16483 Corylus avellana HOM05D004028 ORTHO05D004844 9.5e-76 287.7 373 45.3
vmacro18947 Vaccinium macrocarpon HOM05D004028 ORTHO05D004844 2.8e-75 286.2 367 44.4
Manes.04G119500 Manihot esculenta HOM05D004028 ORTHO05D004844 6.2e-75 285.0 371 45.0
Cfa002035 Carpinus fangiana HOM05D004028 ORTHO05D004844 3.1e-74 282.7 373 44.2
CiPaw.01G242300 Carya illinoinensis HOM05D004028 ORTHO05D004844 3.1e-74 282.7 373 43.4
Rhsim08G0217900 Rhododendron simsii HOM05D000103 ORTHO05D000049 8.9e-74 281.2 370 44.1
Medtr4g011610 Medicago truncatula HOM05D004028 ORTHO05D004844 1.5e-73 280.4 373 43.4
DCAR_016247 Daucus carota HOM05D004028 ORTHO05D004844 3.7e-72 275.8 370 43.5
Nn8g39324 Nelumbo nucifera HOM05D004028 ORTHO05D004844 6.4e-72 275.0 370 44.9
Lj5C65T7 Lonicera japonica HOM05D004028 ORTHO05D004844 3.2e-71 272.7 370 43.0
Lj3g0027440 Lotus japonicus HOM05D004028 ORTHO05D004844 5.4e-71 271.9 372 42.2
Sabra01G0136900 Salix brachista HOM05D004028 ORTHO05D004844 9.2e-71 271.2 371 43.4
VMungo0331G0808 Vigna mungo HOM05D004028 ORTHO05D004844 9.2e-71 271.2 371 42.6
arahy.Tifrunner.gnm1.ann1.09PUMV Arachis hypogaea HOM05D004028 ORTHO05D004844 3.5e-70 269.2 370 41.9
MSTRG.11103 Avicennia marina HOM05D004028 ORTHO05D004844 6.0e-70 268.5 370 41.6
Lalb_Chr04g0262561 Lupinus albus HOM05D004028 ORTHO05D004844 7.8e-70 268.1 371 42.9
TPR.G38588 Trifolium pratense HOM05D004028 ORTHO05D004844 7.8e-70 268.1 371 41.5
Aqoxy7G01945 Aquilegia oxysepala HOM05D004028 ORTHO05D004844 1.3e-69 267.3 370 41.6
Dinv38073 Davidia involucrata HOM05D004028 ORTHO05D004844 1.7e-69 266.9 184 69.0
TWI12G0252 Tripterygium wilfordii HOM05D004028 ORTHO05D004844 2.3e-69 266.5 371 42.9
Psat4g172640 Pisum sativum HOM05D004028 ORTHO05D004844 1.9e-68 263.5 371 42.0
PGR004G0126 Punica granatum HOM05D004028 ORTHO05D004844 9.6e-68 261.2 373 41.3
Nitab4.5_0003751g0020 Nicotiana tabacum HOM05D004028 ORTHO05D004844 1.2e-67 260.8 370 41.6
CSS0044472 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 3.6e-67 259.2 371 42.0
Ca_07170_v3 Cicer arietinum L. HOM05D004028 ORTHO05D004844 4.7e-67 258.8 370 41.1
Phvul.010G152600 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 4.7e-67 258.8 371 41.2
ClCG09G002500 Citrullus lanatus HOM05D004028 ORTHO05D004844 6.2e-67 258.5 370 40.5
TAR636G0621 Trochodendron aralioides HOM05D004028 ORTHO05D004844 6.2e-67 258.5 377 42.4
Potri.001G175600 Populus trichocarpa HOM05D004028 ORTHO05D004844 8.1e-67 258.1 371 42.6
Oeu001149.3 Olea europaea HOM05D004028 ORTHO05D004844 1.4e-66 257.3 370 40.8
Nitab4.5_0000410g0330 Nicotiana tabacum HOM05D004028 ORTHO05D004844 2.4e-66 256.5 370 41.1
Glyma.07G033400 Glycine max HOM05D004028 ORTHO05D004844 1.5e-65 253.8 371 41.0
Sed0005418 Sechium edule HOM05D004028 ORTHO05D004844 3.4e-65 252.7 369 39.8
Glyma.08G208600 Glycine max HOM05D004028 ORTHO05D004844 4.4e-65 252.3 371 41.0
HanXRQChr04g0096371 Helianthus annuus HOM05D004028 ORTHO05D004844 1.3e-64 250.8 374 40.4
Sc12g0009060 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.3e-64 250.8 371 39.9
CAN.G438.98 Capsicum annuum HOM05D004028 ORTHO05D004844 3.8e-64 249.2 370 40.8
Peaxi162Scf00015g00059 Petunia axillaris HOM05D004028 ORTHO05D004844 6.4e-64 248.4 370 40.5
PGSC0003DMG400005615 Solanum tuberosum HOM05D004028 ORTHO05D004844 8.4e-64 248.1 370 40.3
Solyc03g119920.1 Solanum lycopersicum HOM05D004028 ORTHO05D004844 1.4e-63 247.3 370 40.0
AUR62011595 Chenopodium quinoa HOM05D004028 ORTHO05D004844 3.2e-63 246.1 370 40.0
Sopen03g038800 Solanum pennellii HOM05D004028 ORTHO05D004844 3.2e-63 246.1 370 39.7
ECA247G3140 Erigeron canadensis HOM05D004028 ORTHO05D004844 7.1e-63 245.0 373 39.7
CANSAT56G0144 Cannabis sativa HOM05D004028 ORTHO05D004844 1.6e-62 243.8 378 39.4
MELO3C023384.2 Cucumis melo HOM05D004028 ORTHO05D004844 1.7e-61 240.4 370 38.1
EL10Ac9g21967 Beta vulgaris HOM05D004028 ORTHO05D004844 5.1e-61 238.8 370 38.9
AUR62016410 Chenopodium quinoa HOM05D004028 ORTHO05D004844 5.1e-61 238.8 370 39.2
CsaV3_7G032830 Cucumis sativus L. HOM05D004028 ORTHO05D004844 6.6e-61 238.4 370 37.0
Cpa.g.sc10.197 Carica papaya HOM05D004028 ORTHO05D004844 3.3e-60 236.1 184 63.6
Ah.01g021130 Amaranthus hybridus HOM05D004028 ORTHO05D004844 4.3e-60 235.7 371 38.5
MBI04_g43145_MAGBIO Magnolia biondii HOM05D004028 ORTHO05D004844 6.2e-59 231.9 368 39.9
Sed0020445 Sechium edule HOM05D004028 ORTHO05D004844 9.0e-58 228.0 370 37.3
PSO170G5200 Papaver somniferum HOM05D004028 ORTHO05D004844 2.0e-57 226.9 370 38.1
HPP92_021805 Vanilla planifolia HOM05D004028 ORTHO05D004844 2.0e-57 226.9 368 38.3
Oeu001148.1 Olea europaea HOM05D004028 ORTHO05D004844 2.6e-57 226.5 370 38.1
PSO017G1888 Papaver somniferum HOM05D004028 ORTHO05D004844 3.4e-57 226.1 370 38.1
AT1G52780 Arabidopsis thaliana HOM05D004028 ORTHO05D004844 5.8e-57 225.3 369 37.7
AL1G61100 Arabidopsis lyrata HOM05D004028 ORTHO05D004844 2.2e-56 223.4 371 38.0
Thhalv10011203m.g Eutrema salsugineum HOM05D004028 ORTHO05D004844 3.8e-56 222.6 371 37.7
Carub.0001s4187 Capsella rubella HOM05D004028 ORTHO05D004844 1.4e-55 220.7 371 37.5
Sp1g39350 Schrenkiella parvula HOM05D004028 ORTHO05D004844 1.9e-55 220.3 370 38.4
Lsat_1_v5_gn_1_33920 Lactuca sativa HOM05D004028 ORTHO05D004844 4.2e-55 219.2 196 56.6
ATR0083G044 Amborella trichopoda HOM05D004028 ORTHO05D004844 6.0e-54 215.3 372 37.1
BraA06t23378Z Brassica rapa HOM05D004028 ORTHO05D004844 2.3e-53 213.4 370 37.3
A06p01590 Brassica napus HOM05D004028 ORTHO05D004844 3.0e-53 213.0 370 37.3
Aa31LG10G2260 Aethionema arabicum HOM05D004028 ORTHO05D004844 8.7e-53 211.5 368 35.9
CARHR042960 Cardamine hirsuta HOM05D004028 ORTHO05D004844 4.3e-52 209.1 370 37.3
BcaC08g43459 Brassica carinata HOM05D004028 ORTHO05D004844 2.8e-51 206.5 372 37.4
C06p08330 Brassica napus HOM05D004028 ORTHO05D004844 2.8e-51 206.5 372 37.4
BcaB07g33394 Brassica carinata HOM05D004028 ORTHO05D004844 1.1e-50 204.5 369 35.8
Sabra06G0182600 Salix brachista HOM05D004028 ORTHO05D004844 6.7e-45 185.3 217 49.8
CDE01G0290 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 1.3e-43 181.0 370 33.0
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 5.3e-42 175.6 347 36.3
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 1.5e-41 174.1 370 32.2
SEGI_28548 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 1.0e-40 171.4 374 32.6
Zm00001eb122530 Zea mays HOM05D004028 ORTHO05D004844 1.1e-39 167.9 394 30.5
Os01g0176800 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 1.1e-36 157.9 379 30.9
Lj5C65T8 Lonicera japonica HOM05D004028 ORTHO05D004844 2.1e-35 153.7 372 30.4
MD09G1217100 Malus domestica HOM05D004028 ORTHO05D004844 6.3e-35 152.1 167 49.1
Lsat_1_v5_gn_1_33841 Lactuca sativa HOM05D004028 ORTHO05D004844 6.9e-34 148.7 366 30.3
DCAR_021324 Daucus carota HOM05D004028 ORTHO05D004844 5.0e-32 142.5 363 28.4
Hma1.2p1_0018F.1_g013000 Hydrangea macrophylla HOM05D004028 ORTHO05D004844 7.2e-31 138.7 370 28.1
Migut.I00822 Erythranthe guttata HOM05D004028 ORTHO05D004844 7.9e-30 135.2 178 40.4
CSS0013629 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 5.1e-29 132.5 374 26.7
TAR636G1811 Trochodendron aralioides HOM05D004028 ORTHO05D004844 1.5e-28 131.0 90 70.0
PGSC0003DMG400028640 Solanum tuberosum HOM05D004028 ORTHO05D004844 2.5e-28 130.2 365 27.7
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 2.8e-27 126.7 269 30.9
GSVIVG01017205001 Vitis vinifera HOM05D004028 ORTHO05D004844 4.8e-27 125.9 374 26.5
Migut.I00821 Erythranthe guttata HOM05D004028 ORTHO05D004844 6.3e-27 125.6 166 39.2
Cc09_g08350 Coffea canephora HOM05D004028 ORTHO05D004844 9.0e-26 121.7 374 29.4
Sc12g0009050 Simmondsia chinensis HOM05D004028 ORTHO05D004844 3.4e-25 119.8 125 48.0
Glyma.06G212100 Glycine max HOM05D004028 ORTHO05D004844 1.1e-23 114.8 377 26.8
Sc05g0000340 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.2e-22 111.3 353 27.8
Phvul.009G199800 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 6.1e-22 109.0 378 26.2
SalBow2G1894 Salvia bowleyana HOM05D004028 ORTHO05D004844 6.1e-22 109.0 71 73.2
TAR636G0233 Trochodendron aralioides HOM05D004028 ORTHO05D004844 6.1e-22 109.0 255 32.2
COL.COLO4_34970 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.6e-20 103.6 376 28.7
Duzib168G0223 Durio zibethinus HOM05D004028 ORTHO05D004844 1.3e-19 101.3 304 26.3
Os07g0580700 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 1.7e-19 100.9 370 25.9
Lsat_1_v5_gn_8_94080 Lactuca sativa HOM05D004028 ORTHO05D004844 2.8e-19 100.1 352 28.7
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 6.3e-19 99.0 363 25.6
COL.COLO4_34965 Corchorus olitorius HOM05D004028 ORTHO05D004844 8.2e-19 98.6 164 38.4
Os07g0580766 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 8.2e-19 98.6 334 26.6
AUR62031946 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.1e-18 98.2 356 25.6
Gorai.001G003000 Gossypium raimondii HOM05D004028 ORTHO05D004844 1.4e-18 97.8 355 27.9
HanXRQChr14g0455571 Helianthus annuus HOM05D004028 ORTHO05D004844 1.8e-18 97.4 328 26.2
Mapoly0121s0043 Marchantia polymorpha HOM05D004028 ORTHO05D004844 3.1e-18 96.7 146 33.6
Peaxi162Scf00034g00112 Petunia axillaris HOM05D004028 ORTHO05D004844 3.1e-18 96.7 313 26.5
Gohir.D07G003000 Gossypium hirsutum HOM05D004028 ORTHO05D004844 4.1e-18 96.3 355 27.6
COL.COLO4_34968 Corchorus olitorius HOM05D004028 ORTHO05D004844 5.3e-18 95.9 368 26.9
COL.COLO4_35012 Corchorus olitorius HOM05D004028 ORTHO05D004844 5.3e-18 95.9 370 26.5
arahy.Tifrunner.gnm1.ann1.B5Y4IK Arachis hypogaea HOM05D004028 ORTHO05D004844 9.1e-18 95.1 348 25.0
AUR62022234 Chenopodium quinoa HOM05D004028 ORTHO05D004844 9.1e-18 95.1 329 26.4
Mapoly0017s0023 Marchantia polymorpha HOM05D004028 ORTHO05D004844 9.1e-18 95.1 143 32.9
Gohir.A07G002700 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.2e-17 94.7 348 27.0
Ciclev10010305m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.5e-17 94.4 192 32.8
arahy.Tifrunner.gnm1.ann1.65GG0R Arachis hypogaea HOM05D004028 ORTHO05D004844 2.0e-17 94.0 348 25.6
COL.COLO4_34971 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.3e-16 91.3 375 26.1
ECA236G0421 Erigeron canadensis HOM05D004028 ORTHO05D004844 2.2e-16 90.5 177 32.2
Gorai.001G002900 Gossypium raimondii HOM05D004028 ORTHO05D004844 2.2e-16 90.5 348 25.9
ECA236G2741 Erigeron canadensis HOM05D004028 ORTHO05D004844 8.5e-16 88.6 338 23.7
COL.COLO4_34966 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.9e-15 87.4 306 30.1
Cc09_g08320 Coffea canephora HOM05D004028 ORTHO05D004844 2.5e-15 87.0 186 34.9
SMO180G0024 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 4.2e-15 86.3 107 42.1
Sopen12g022140 Solanum pennellii HOM05D004028 ORTHO05D004844 7.2e-15 85.5 126 38.9
SMO340G0015 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 9.4e-15 85.1 107 41.1
Potri.006G187000 Populus trichocarpa HOM05D004028 ORTHO05D004844 1.0e-13 81.6 358 25.4
Gohir.D07G002950 Gossypium hirsutum HOM05D004028 ORTHO05D004844 3.9e-13 79.7 347 25.6
Sc12g0009040 Simmondsia chinensis HOM05D004028 ORTHO05D004844 9.7e-12 75.1 67 53.7
Ciclev10010489m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.3e-11 74.7 95 42.1
MD09G1217000 Malus domestica HOM05D004028 ORTHO05D004844 1.7e-11 74.3 95 48.4
SalBow2G1023 Salvia bowleyana HOM05D004028 ORTHO05D004844 2.2e-11 73.9 65 52.3
Sabra06G0142000 Salix brachista HOM05D004028 ORTHO05D004844 4.1e-10 69.7 85 44.7
Ciclev10010748m.g Citrus clementina HOM05D004028 ORTHO05D004844 9.1e-10 68.6 96 40.6
Thecc.09G118100 Theobroma cacao HOM05D004028 ORTHO05D004844 1.2e-09 68.2 146 29.5
Dinv38074 Davidia involucrata HOM05D004028 ORTHO05D004844 6.1e-06 55.8 56 46.4


User provided reference genes

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