Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 5.2e-156 554.3 272 100.0
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 2.5e-102 375.9 243 77.4
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 7.7e-75 284.6 248 60.1
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.9e-73 280.0 248 58.9
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.9e-73 280.0 226 65.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 6.3e-69 265.0 259 55.2
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.5e-67 259.2 264 54.5
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 5.9e-67 258.5 252 55.2
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 3.0e-63 246.1 252 54.0
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 8.9e-63 244.6 150 75.3
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.5e-62 243.8 252 53.2
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 7.5e-62 241.5 163 68.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.2e-61 240.0 248 51.6
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 3.7e-61 239.2 237 53.2
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 8.3e-61 238.0 177 65.5
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 8.3e-61 238.0 276 49.6
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.1e-60 237.7 252 51.2
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 1.8e-60 236.9 183 63.4
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 7.0e-60 235.0 242 52.9
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 9.2e-60 234.6 248 50.4
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 2.0e-59 233.4 251 52.2
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 3.5e-59 232.6 163 65.6
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 3.0e-58 229.6 204 57.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.6e-58 228.0 158 69.0
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.1e-57 227.6 253 51.8
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.9e-57 226.9 186 63.4
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.9e-57 226.9 163 66.3
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 9.5e-57 224.6 230 54.8
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.2e-56 224.2 246 48.0
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 4.7e-56 222.2 245 50.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 4.7e-56 222.2 234 52.6
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 8.0e-56 221.5 169 65.1
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 2.3e-55 219.9 250 49.2
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.2e-54 217.6 248 50.0
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.3e-53 214.2 251 49.8
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 1.7e-53 213.8 258 47.7
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 2.2e-53 213.4 233 47.2
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.9e-53 213.0 182 60.4
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.4e-52 210.7 235 51.9
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 2.4e-52 209.9 248 49.2
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.4e-52 209.9 252 45.6
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 7.0e-52 208.4 184 57.1
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.6e-51 207.2 202 53.0
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 3.5e-51 206.1 253 48.2
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 7.8e-51 204.9 253 45.8
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.7e-50 203.8 250 43.6
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 5.0e-50 202.2 255 44.3
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 5.0e-50 202.2 251 45.0
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 1.9e-49 200.3 235 49.8
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 3.3e-49 199.5 251 44.6
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 5.6e-49 198.7 186 56.5
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 2.1e-48 196.8 163 62.6
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.8e-48 196.4 233 46.4
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 4.7e-48 195.7 184 59.2
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.7e-48 195.7 233 45.9
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 4.7e-48 195.7 172 53.5
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 8.1e-48 194.9 173 56.1
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.8e-47 193.7 251 43.0
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.3e-47 193.4 233 46.4
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 8.9e-47 191.4 214 46.7
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 8.9e-47 191.4 208 47.6
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.2e-46 191.0 190 51.1
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.2e-46 191.0 247 45.3
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 3.4e-46 189.5 251 45.4
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 9.8e-46 188.0 265 45.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.3e-45 187.6 325 39.1
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.7e-45 187.2 207 48.3
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 3.7e-45 186.0 174 55.2
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 1.1e-44 184.5 253 43.5
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.1e-44 184.5 199 45.7
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 1.9e-44 183.7 198 47.5
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 2.7e-43 179.9 207 46.9
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.7e-43 179.9 271 43.5
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 4.6e-43 179.1 196 47.4
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 4.6e-43 179.1 249 42.2
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.0e-43 178.7 272 43.0
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 8.6e-42 174.9 216 50.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.5e-41 174.1 187 50.3
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 1.9e-41 173.7 169 53.8
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 4.3e-41 172.6 250 42.8
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 5.6e-41 172.2 174 51.1
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 7.3e-41 171.8 194 45.9
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.2e-40 171.0 217 48.4
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.1e-39 167.9 247 42.9
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.4e-39 167.5 232 44.0
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.3e-39 166.8 174 53.4
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 2.3e-39 166.8 227 41.9
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 5.2e-39 165.6 153 54.2
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.0e-38 163.7 168 50.0
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.6e-38 163.3 144 56.9
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.6e-38 163.3 134 60.4
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 3.4e-38 162.9 141 58.9
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 4.4e-38 162.5 137 57.7
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.8e-38 162.2 142 58.5
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 7.6e-38 161.8 155 53.5
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 6.4e-37 158.7 168 48.2
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 6.4e-37 158.7 140 56.4
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.4e-36 157.5 269 36.8
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 5.4e-36 155.6 139 55.4
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 9.2e-36 154.8 157 47.1
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 9.2e-36 154.8 142 54.9
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.2e-35 154.5 215 41.4
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.1e-35 153.7 142 53.5
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 2.1e-35 153.7 180 46.7
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.1e-35 153.7 142 53.5
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.1e-35 153.7 142 53.5
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 2.1e-35 153.7 180 46.7
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 7.3e-33 145.2 113 61.9
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 7.3e-33 145.2 142 53.5
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.6e-32 144.1 223 40.4
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 3.6e-32 142.9 169 45.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 6.4e-29 132.1 169 45.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.4e-28 131.0 258 35.7
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.1e-25 121.3 131 53.4
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 2.8e-24 116.7 260 35.8
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 6.4e-21 105.5 129 40.3
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 3.2e-20 103.2 112 44.6
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 4.6e-19 99.4 129 39.5
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 1.0e-18 98.2 110 47.3
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.5e-17 94.4 69 60.9
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 1.4e-15 87.8 80 53.8
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 3.0e-10 70.1 74 37.8


User provided reference genes

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