Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 4.7e-88 327.8 160 100.0
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.2e-78 296.6 188 79.8
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.2e-78 296.6 188 79.8
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 1.5e-78 296.2 188 79.3
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 1.4e-76 289.7 180 81.1
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.4e-76 288.9 188 78.2
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.1e-76 288.5 188 78.2
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 1.6e-75 286.2 188 76.6
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.0e-75 285.8 188 76.6
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.5e-75 285.0 188 76.1
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 4.5e-75 284.6 188 76.1
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 4.5e-75 284.6 188 76.1
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 1.0e-74 283.5 188 76.6
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.3e-74 283.1 188 75.5
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.8e-74 281.6 188 75.5
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.8e-74 281.6 188 75.5
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 3.8e-74 281.6 188 75.5
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 8.6e-74 280.4 188 75.5
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 8.6e-74 280.4 188 76.6
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 8.6e-74 280.4 188 75.0
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.1e-73 280.0 188 75.5
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 2.5e-73 278.9 188 75.0
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 2.5e-73 278.9 188 76.1
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 2.5e-73 278.9 188 75.0
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 3.3e-73 278.5 188 75.0
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 4.3e-73 278.1 188 74.5
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 5.6e-73 277.7 188 73.9
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 5.6e-73 277.7 188 73.9
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 5.6e-73 277.7 188 75.5
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 7.3e-73 277.3 188 73.9
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 9.5e-73 276.9 188 73.9
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 9.5e-73 276.9 188 73.9
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.2e-72 276.6 188 73.4
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.2e-72 276.6 188 73.9
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.2e-72 276.6 186 73.7
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.2e-72 276.6 188 73.9
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.1e-72 275.8 188 73.4
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.8e-72 275.4 188 74.5
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 3.6e-72 275.0 186 72.6
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 4.7e-72 274.6 188 74.5
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 4.7e-72 274.6 188 74.5
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 4.7e-72 274.6 188 74.5
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 4.7e-72 274.6 187 74.3
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 6.1e-72 274.2 186 73.1
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 6.1e-72 274.2 188 75.0
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 6.1e-72 274.2 188 72.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 6.1e-72 274.2 188 73.9
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 8.0e-72 273.9 188 74.5
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 8.0e-72 273.9 188 74.5
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 8.0e-72 273.9 188 74.5
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-71 273.1 188 74.5
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.4e-71 273.1 188 74.5
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.4e-71 273.1 188 74.5
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.4e-71 273.1 186 72.0
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.4e-71 273.1 186 72.0
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.8e-71 272.7 188 73.4
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 1.8e-71 272.7 188 72.3
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 2.3e-71 272.3 188 73.9
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 2.3e-71 272.3 188 73.9
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 2.3e-71 272.3 188 73.9
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 2.3e-71 272.3 188 73.9
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 2.3e-71 272.3 188 72.9
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 3.1e-71 271.9 188 72.9
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 3.1e-71 271.9 188 72.3
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 3.1e-71 271.9 188 72.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 3.1e-71 271.9 188 72.9
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 4.0e-71 271.6 188 72.3
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 5.2e-71 271.2 188 73.9
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 5.2e-71 271.2 188 71.3
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 6.8e-71 270.8 188 72.3
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 1.2e-70 270.0 188 71.8
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 1.2e-70 270.0 188 71.3
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.2e-70 270.0 186 71.5
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 1.2e-70 270.0 188 71.8
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 1.5e-70 269.6 188 73.9
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 1.5e-70 269.6 188 73.9
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.6e-70 268.9 188 73.4
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 2.6e-70 268.9 188 73.4
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.6e-70 268.9 188 73.4
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 2.6e-70 268.9 188 73.4
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 3.4e-70 268.5 188 72.3
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 3.4e-70 268.5 179 74.9
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 3.4e-70 268.5 188 71.8
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 5.8e-70 267.7 188 72.9
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 5.8e-70 267.7 188 71.8
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 7.5e-70 267.3 188 73.4
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 7.5e-70 267.3 188 71.3
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 9.8e-70 266.9 190 72.6
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 9.8e-70 266.9 190 72.6
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 1.3e-69 266.5 188 71.8
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.7e-69 266.2 188 70.7
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 2.2e-69 265.8 188 72.3
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 2.9e-69 265.4 188 72.9
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.9e-69 265.4 188 71.8
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 3.7e-69 265.0 188 72.3
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 3.7e-69 265.0 188 71.8
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 3.7e-69 265.0 188 71.3
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 3.7e-69 265.0 188 72.3
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 4.9e-69 264.6 188 71.3
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.9e-68 262.7 188 71.8
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 1.9e-68 262.7 188 71.8
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.4e-68 262.3 188 69.7
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 5.4e-68 261.2 188 69.7
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 1.2e-67 260.0 188 70.7
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 3.5e-67 258.5 188 68.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 1.0e-66 256.9 189 70.9
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 1.7e-66 256.1 188 69.7
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.5e-65 252.3 188 67.0
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 3.3e-65 251.9 189 69.8
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.3e-65 251.5 180 68.9
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 4.3e-65 251.5 189 70.4
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 5.6e-65 251.1 189 70.4
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.2e-64 250.0 189 70.9
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.2e-64 250.0 188 69.7
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.6e-64 249.6 188 70.2
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.1e-64 249.2 174 73.0
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.3e-63 245.7 188 67.6
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 4.0e-63 245.0 169 73.4
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 1.2e-62 243.4 189 69.8
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 5.8e-62 241.1 188 66.5
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.3e-61 240.0 188 64.9
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 2.2e-61 239.2 188 65.4
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 3.7e-61 238.4 166 73.5
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 6.4e-61 237.7 188 64.4
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 6.4e-61 237.7 176 71.0
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 1.1e-60 236.9 188 64.4
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 5.4e-60 234.6 190 64.2
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.1e-59 232.6 187 61.5
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 7.8e-59 230.7 176 69.3
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.0e-58 230.3 190 63.7
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 3.9e-58 228.4 188 63.3
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 1.6e-56 223.0 188 58.0
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 6.2e-56 221.1 188 63.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 4.0e-55 218.4 184 59.8
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 4.0e-55 218.4 184 59.8
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 1.2e-54 216.9 188 58.0
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 7.5e-54 214.2 179 62.0
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 7.5e-54 214.2 187 58.8
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.4e-52 209.1 179 59.2
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 3.2e-52 208.8 179 60.9
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 9.2e-52 207.2 189 56.6
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 6.0e-51 204.5 187 56.7
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 4.7e-48 194.9 151 68.2
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-47 193.7 181 58.6
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 1.8e-47 193.0 115 80.9
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 7.6e-46 187.6 109 83.5
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.7e-45 186.4 180 51.1
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 9.2e-44 180.6 170 54.1
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 8.7e-42 174.1 185 53.5
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.1e-41 173.7 127 71.7
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 3.1e-39 165.6 85 94.1
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 8.4e-37 157.5 179 48.6
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 1.8e-31 139.8 78 83.3
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 2.9e-29 132.5 121 57.9
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.1e-27 126.3 160 51.9
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.3e-26 122.9 91 69.2
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.3e-25 118.6 173 45.7
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 6.2e-24 114.8 127 51.2
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 5.5e-12 75.1 41 80.5
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.3e-10 70.5 35 91.4


User provided reference genes

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