Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44310 Davidia involucrata HOM05D063241 ORTHO05D035069 9.6e-214 746.5 362 100.0
Dinv20286 Davidia involucrata HOM05D063241 ORTHO05D035069 3.2e-28 130.2 73 84.9
Dinv15197 Davidia involucrata HOM05D000660 ORTHO05D003823 8.0e-27 125.6 65 86.2
Actinidia13368 Actinidia chinensis HOM05D000660 ORTHO05D003823 9.8e-25 118.6 65 78.5
Actinidia40357 Actinidia chinensis HOM05D000660 ORTHO05D003823 6.3e-24 115.9 65 78.5
GSVIVG01035027001 Vitis vinifera HOM05D000660 ORTHO05D003823 1.1e-23 115.2 66 75.8
Lj6C688T9 Lonicera japonica HOM05D000660 ORTHO05D003823 1.4e-23 114.8 60 85.0
CSS0001347 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 2.4e-23 114.0 65 81.5
CSS0036186 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 2.4e-23 114.0 65 81.5
Nn3g21665 Nelumbo nucifera HOM05D000660 ORTHO05D003823 3.5e-22 110.2 65 75.4
CSS0035880 Camellia sinensis var. sinensis HOM05D000660 ORTHO05D003823 4.5e-22 109.8 65 75.4
Hund11955 Selenicereus undatus HOM05D000660 ORTHO05D003823 4.5e-22 109.8 65 73.8
Sopen12g034010 Solanum pennellii HOM05D000660 ORTHO05D003823 4.5e-22 109.8 65 76.9
Solyc12g099340.3 Solanum lycopersicum HOM05D000660 ORTHO05D003823 5.9e-22 109.4 81 64.2
AUR62016135 Chenopodium quinoa HOM05D000660 ORTHO05D003823 1.3e-21 108.2 65 76.9
AUR62041410 Chenopodium quinoa HOM05D000660 ORTHO05D003823 2.9e-21 107.1 65 75.4
Oeu016483.1 Olea europaea HOM05D000660 ORTHO05D003823 2.9e-21 107.1 65 75.4
Oeu006447.1 Olea europaea HOM05D000660 ORTHO05D003823 5.0e-21 106.3 65 75.4
TAR633G0684 Trochodendron aralioides HOM05D000660 ORTHO05D003823 8.6e-21 105.5 65 73.8
Thecc.04G296700 Theobroma cacao HOM05D000660 ORTHO05D003823 1.5e-20 104.8 65 70.8
Gohir.D10G177800 Gossypium hirsutum HOM05D000660 ORTHO05D003823 1.9e-20 104.4 65 73.8
Gorai.011G198600 Gossypium raimondii HOM05D000660 ORTHO05D003823 1.9e-20 104.4 65 73.8
SalBow8G3172 Salvia bowleyana HOM05D000660 ORTHO05D003823 1.9e-20 104.4 63 71.4
SalBow8G5344 Salvia bowleyana HOM05D000660 ORTHO05D003823 1.9e-20 104.4 63 71.4
PGR031G0095 Punica granatum HOM05D000660 ORTHO05D003823 2.5e-20 104.0 65 72.3
ECA248G0336 Erigeron canadensis HOM05D000660 ORTHO05D003823 3.3e-20 103.6 65 73.8
Gohir.A10G170700 Gossypium hirsutum HOM05D000660 ORTHO05D003823 3.3e-20 103.6 65 72.3
Glyma.15G143400 Glycine max HOM05D000660 ORTHO05D003823 4.2e-20 103.2 65 70.8
Cpa.g.sc929.1 Carica papaya HOM05D000660 ORTHO05D003823 5.5e-20 102.8 65 69.2
Glyma.09G038300 Glycine max HOM05D000660 ORTHO05D003823 5.5e-20 102.8 65 69.2
TWI09G1385 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 5.5e-20 102.8 65 73.8
TAR362G1226 Trochodendron aralioides HOM05D000660 ORTHO05D003823 7.2e-20 102.4 65 70.8
Ah.13g072050 Amaranthus hybridus HOM05D000660 ORTHO05D003823 9.5e-20 102.1 65 72.3
EL10Ac3g05455 Beta vulgaris HOM05D000660 ORTHO05D003823 9.5e-20 102.1 65 70.8
Nitab4.5_0001305g0010 Nicotiana tabacum HOM05D000660 ORTHO05D003823 1.2e-19 101.7 65 72.3
Peaxi162Scf00065g00120 Petunia axillaris HOM05D000660 ORTHO05D003823 1.6e-19 101.3 65 73.8
Sc13g0006390 Simmondsia chinensis HOM05D000660 ORTHO05D003823 2.1e-19 100.9 65 66.2
DCAR_027015 Daucus carota HOM05D000660 ORTHO05D003823 2.8e-19 100.5 65 70.8
Lsat_1_v5_gn_1_43941 Lactuca sativa HOM05D000660 ORTHO05D003823 2.8e-19 100.5 65 72.3
CsaV3_6G022470 Cucumis sativus L. HOM05D000660 ORTHO05D003823 3.6e-19 100.1 65 69.2
Migut.G00093 Erythranthe guttata HOM05D000660 ORTHO05D003823 3.6e-19 100.1 63 68.3
Manes.03G202200 Manihot esculenta HOM05D000660 ORTHO05D003823 3.6e-19 100.1 65 69.2
Nitab4.5_0003294g0010 Nicotiana tabacum HOM05D000660 ORTHO05D003823 3.6e-19 100.1 65 70.8
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 3.6e-19 100.1 65 67.7
arahy.Tifrunner.gnm1.ann1.70REMX Arachis hypogaea HOM05D000660 ORTHO05D003823 4.7e-19 99.8 65 67.7
Carub.0003s1669 Capsella rubella HOM05D000660 ORTHO05D003823 4.7e-19 99.8 66 69.7
CAN.G197.10 Capsicum annuum HOM05D000660 ORTHO05D003823 4.7e-19 99.8 65 70.8
COL.COLO4_34655 Corchorus olitorius HOM05D000660 ORTHO05D003823 4.7e-19 99.8 65 69.2
Lj4g0003383 Lotus japonicus HOM05D000660 ORTHO05D003823 4.7e-19 99.8 65 66.2
Solyc01g060170.4 Solanum lycopersicum HOM05D000660 ORTHO05D003823 4.7e-19 99.8 65 70.8
Sopen01g026290 Solanum pennellii HOM05D000660 ORTHO05D003823 4.7e-19 99.8 65 70.8
Ca_01875_v3 Cicer arietinum L. HOM05D000660 ORTHO05D003823 6.1e-19 99.4 65 66.2
Lj6g0007586 Lotus japonicus HOM05D000660 ORTHO05D003823 6.1e-19 99.4 65 67.7
Psat1g160720 Pisum sativum HOM05D000660 ORTHO05D003823 6.1e-19 99.4 65 66.2
PGR004G1371 Punica granatum HOM05D000660 ORTHO05D003823 6.1e-19 99.4 65 67.7
AT3G16940 Arabidopsis thaliana HOM05D000660 ORTHO05D003823 8.0e-19 99.0 60 73.3
MELO3C021280.2 Cucumis melo HOM05D000660 ORTHO05D003823 8.0e-19 99.0 65 69.2
Migut.N00052 Erythranthe guttata HOM05D000660 ORTHO05D003823 8.0e-19 99.0 58 75.9
AL3G29920 Arabidopsis lyrata HOM05D000660 ORTHO05D003823 1.0e-18 98.6 66 68.2
ClCG06G004700 Citrullus lanatus HOM05D000660 ORTHO05D003823 1.0e-18 98.6 65 67.7
HanXRQChr01g0029901 Helianthus annuus HOM05D000660 ORTHO05D003823 1.0e-18 98.6 60 73.3
Nn4g25624 Nelumbo nucifera HOM05D000660 ORTHO05D003823 1.0e-18 98.6 65 69.2
arahy.Tifrunner.gnm1.ann1.AHLX63 Arachis hypogaea HOM05D000660 ORTHO05D003823 1.4e-18 98.2 62 71.0
arahy.Tifrunner.gnm1.ann1.UNJ3ZI Arachis hypogaea HOM05D000660 ORTHO05D003823 1.4e-18 98.2 62 71.0
CARHR092210 Cardamine hirsuta HOM05D000660 ORTHO05D003823 1.4e-18 98.2 66 66.7
Duzib212G0471 Durio zibethinus HOM05D000660 ORTHO05D003823 1.8e-18 97.8 71 62.0
Eucgr.H04035 Eucalyptus grandis HOM05D000660 ORTHO05D003823 1.8e-18 97.8 65 67.7
Lsat_1_v5_gn_6_114260 Lactuca sativa HOM05D000660 ORTHO05D003823 1.8e-18 97.8 65 66.2
TWI73G0500 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 1.8e-18 97.8 65 69.2
MSTRG.10139 Avicennia marina HOM05D000660 ORTHO05D003823 2.3e-18 97.4 57 75.4
Hund03104 Selenicereus undatus HOM05D000660 ORTHO05D003823 2.3e-18 97.4 65 69.2
Prupe.1G122800 Prunus persica HOM05D000660 ORTHO05D003823 3.0e-18 97.1 58 74.1
Medtr2g034650 Medicago truncatula HOM05D000660 ORTHO05D003823 4.0e-18 96.7 64 64.1
Medtr4g121840 Medicago truncatula HOM05D000660 ORTHO05D003823 4.0e-18 96.7 65 63.1
Phvul.003G111900 Phaseolus vulgaris HOM05D000660 ORTHO05D003823 4.0e-18 96.7 65 64.6
Sp3g15170 Schrenkiella parvula HOM05D000660 ORTHO05D003823 4.0e-18 96.7 60 71.7
Hund03106 Selenicereus undatus HOM05D000660 ORTHO05D003823 4.0e-18 96.7 65 69.2
CiPaw.01G141000 Carya illinoinensis HOM05D000660 ORTHO05D003823 5.2e-18 96.3 59 72.9
FvH4_4g19400 Fragaria vesca HOM05D000660 ORTHO05D003823 5.2e-18 96.3 57 73.7
FAN07G0370 Fragaria x ananassa HOM05D000660 ORTHO05D003823 5.2e-18 96.3 57 73.7
FAN12G0613 Fragaria x ananassa HOM05D000660 ORTHO05D003823 5.2e-18 96.3 57 73.7
FAN12G4342 Fragaria x ananassa HOM05D000660 ORTHO05D003823 5.2e-18 96.3 57 73.7
PSO541G0234 Papaver somniferum HOM05D000660 ORTHO05D003823 5.2e-18 96.3 66 65.2
Sabra10G0109600 Salix brachista HOM05D000660 ORTHO05D003823 5.2e-18 96.3 64 67.2
Cc03_g01050 Coffea canephora HOM05D000660 ORTHO05D003823 6.8e-18 95.9 57 73.7
Thhalv10020047m.g Eutrema salsugineum HOM05D000660 ORTHO05D003823 6.8e-18 95.9 66 65.2
DCAR_030479 Daucus carota HOM05D000660 ORTHO05D003823 8.9e-18 95.5 65 64.6
MD16G1157900 Malus domestica HOM05D000660 ORTHO05D003823 8.9e-18 95.5 58 72.4
BcaB06g25786 Brassica carinata HOM05D000660 ORTHO05D003823 1.2e-17 95.1 60 70.0
BcaC05g28839 Brassica carinata HOM05D000660 ORTHO05D003823 1.2e-17 95.1 60 70.0
A05p32730 Brassica napus HOM05D000660 ORTHO05D003823 1.2e-17 95.1 60 70.0
C05p49450 Brassica napus HOM05D000660 ORTHO05D003823 1.2e-17 95.1 60 70.0
BolC5t33692H Brassica oleracea HOM05D000660 ORTHO05D003823 1.2e-17 95.1 60 70.0
BraA05t22095Z Brassica rapa HOM05D000660 ORTHO05D003823 1.2e-17 95.1 60 70.0
CiPaw.02G076200 Carya illinoinensis HOM05D000660 ORTHO05D003823 1.2e-17 95.1 59 69.5
Glyma.07G242000 Glycine max HOM05D000660 ORTHO05D003823 1.2e-17 95.1 65 63.1
Phvul.009G254500 Phaseolus vulgaris HOM05D000660 ORTHO05D003823 1.2e-17 95.1 65 63.1
Potri.008G107900 Populus trichocarpa HOM05D000660 ORTHO05D003823 1.2e-17 95.1 65 66.2
Potri.010G141700 Populus trichocarpa HOM05D000660 ORTHO05D003823 1.2e-17 95.1 65 66.2
THA.LOC104802602 Tarenaya hassleriana HOM05D000660 ORTHO05D003823 1.2e-17 95.1 65 63.1
Glyma.17G031900 Glycine max HOM05D000660 ORTHO05D003823 1.5e-17 94.7 58 70.7
Gorai.005G065700 Gossypium raimondii HOM05D000660 ORTHO05D003823 1.5e-17 94.7 65 64.6
PSO675G1345 Papaver somniferum HOM05D000660 ORTHO05D003823 1.5e-17 94.7 66 65.2
QL06p011538 Quercus lobata HOM05D000660 ORTHO05D003823 1.5e-17 94.7 59 72.9
Aa31LG8G4000 Aethionema arabicum HOM05D000660 ORTHO05D003823 2.0e-17 94.4 58 74.1
MBI19_g24816_MAGBIO Magnolia biondii HOM05D000660 ORTHO05D003823 2.0e-17 94.4 65 69.2
Sabra08G0081600 Salix brachista HOM05D000660 ORTHO05D003823 2.0e-17 94.4 69 65.2
Ca_21455_v3 Cicer arietinum L. HOM05D000660 ORTHO05D003823 2.6e-17 94.0 65 60.0
FvH4_5g29370 Fragaria vesca HOM05D000660 ORTHO05D000498 2.6e-17 94.0 57 71.9
Gohir.D02G058200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 2.6e-17 94.0 65 64.6
TPR.G16847 Trifolium pratense HOM05D000660 ORTHO05D003823 2.6e-17 94.0 65 61.5
Ciclev10004273m.g Citrus clementina HOM05D000660 ORTHO05D003823 3.4e-17 93.6 57 75.4
BcaB04g18367 Brassica carinata HOM05D000660 ORTHO05D003823 4.4e-17 93.2 71 60.6
Thhalv10024342m.g Eutrema salsugineum HOM05D000660 ORTHO05D003823 4.4e-17 93.2 59 67.8
Gohir.A09G065200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 5.7e-17 92.8 63 69.8
HanXRQChr05g0148191 Helianthus annuus HOM05D000660 ORTHO05D003823 5.7e-17 92.8 65 66.2
Lalb_Chr13g0298391 Lupinus albus HOM05D000660 ORTHO05D003823 7.5e-17 92.4 65 63.1
CDE02G4595 Ceratophyllum demersum HOM05D000660 ORTHO05D003823 9.8e-17 92.0 63 63.5
Sp7g14650 Schrenkiella parvula HOM05D000660 ORTHO05D003823 9.8e-17 92.0 65 61.5
Cfa015345 Carpinus fangiana HOM05D000660 ORTHO05D003823 1.3e-16 91.7 59 71.2
Gohir.D09G064200 Gossypium hirsutum HOM05D000660 ORTHO05D003823 1.3e-16 91.7 63 68.3
Gorai.006G079000 Gossypium raimondii HOM05D000660 ORTHO05D003823 1.3e-16 91.7 63 68.3
Lalb_Chr12g0200951 Lupinus albus HOM05D000660 ORTHO05D003823 1.3e-16 91.7 65 61.5
SGA_v2.0_scaffold67G22570 Striga asiatica HOM05D000660 ORTHO05D003823 1.3e-16 91.7 59 69.5
TPR.G5767 Trifolium pratense HOM05D000660 ORTHO05D003823 1.3e-16 91.7 65 61.5
MSTRG.21779 Avicennia marina HOM05D000660 ORTHO05D003823 1.7e-16 91.3 57 71.9
A08p12400 Brassica napus HOM05D000660 ORTHO05D003823 1.7e-16 91.3 65 63.1
BraA08t33216Z Brassica rapa HOM05D000660 ORTHO05D003823 1.7e-16 91.3 65 63.1
Gohir.A02G053500 Gossypium hirsutum HOM05D000660 ORTHO05D003823 1.7e-16 91.3 57 68.4
BolC8t48338H Brassica oleracea HOM05D000660 ORTHO05D003823 2.2e-16 90.9 64 64.1
CARHR222510 Cardamine hirsuta HOM05D000660 ORTHO05D003823 2.8e-16 90.5 59 66.1
RcHm_v2.0_Chr4g0424431 Rosa chinensis HOM05D000660 ORTHO05D003823 2.8e-16 90.5 58 72.4
Sed0012995 Sechium edule HOM05D000660 ORTHO05D003823 2.8e-16 90.5 59 69.5
VMungo1215G0416 Vigna mungo HOM05D000660 ORTHO05D003823 2.8e-16 90.5 65 61.5
Aqoxy2G02782 Aquilegia oxysepala HOM05D000660 ORTHO05D003823 3.7e-16 90.1 58 69.0
Carub.0007s2541 Capsella rubella HOM05D000660 ORTHO05D003823 3.7e-16 90.1 59 64.4
BcaC07g37956 Brassica carinata HOM05D000660 ORTHO05D003823 6.3e-16 89.4 64 62.5
unitig_88.g27707 Utricularia gibba HOM05D000660 ORTHO05D003823 6.3e-16 89.4 58 67.2
Lalb_Chr18g0058851 Lupinus albus HOM05D000660 ORTHO05D003823 8.3e-16 89.0 57 70.2
Cfa015489 Carpinus fangiana HOM05D000660 ORTHO05D003823 1.1e-15 88.6 61 62.3
ECA246G5148 Erigeron canadensis HOM05D000660 ORTHO05D003823 1.1e-15 88.6 65 61.5
Psat4g022600 Pisum sativum HOM05D000660 ORTHO05D003823 1.4e-15 88.2 66 60.6
PSO210G4000 Papaver somniferum HOM05D000660 ORTHO05D003823 2.4e-15 87.4 58 63.8
PSO761G0659 Papaver somniferum HOM05D000660 ORTHO05D003823 2.4e-15 87.4 58 63.8
Aa31LG10G5980 Aethionema arabicum HOM05D000660 ORTHO05D003823 4.1e-15 86.7 67 62.7
Atru.chr4.2977 Acer truncatum HOM05D000660 ORTHO05D003823 7.0e-15 85.9 58 67.2
vmacro08067 Vaccinium macrocarpon HOM05D000660 ORTHO05D003823 1.2e-14 85.1 43 86.0
vmacro15192 Vaccinium macrocarpon HOM05D000660 ORTHO05D003823 2.0e-14 84.3 60 68.3
CANSAT78G1612 Cannabis sativa HOM05D000660 ORTHO05D003823 1.0e-13 82.0 59 61.0
Rhsim02G0005500 Rhododendron simsii HOM05D000660 ORTHO05D003823 8.6e-13 79.0 44 81.8
ATR0706G290 Amborella trichopoda HOM05D000660 ORTHO05D003823 2.5e-12 77.4 57 59.6
Rhsim04G0233600 Rhododendron simsii HOM05D000660 ORTHO05D003823 4.3e-12 76.6 50 70.0
HPP92_003740 Vanilla planifolia HOM05D000660 ORTHO05D003823 4.3e-12 76.6 58 56.9
arahy.Tifrunner.gnm1.ann1.GX0UVA Arachis hypogaea HOM05D000660 ORTHO05D003823 9.5e-12 75.5 44 77.3
SGA_v2.0_scaffold264G46038 Striga asiatica HOM05D000660 ORTHO05D003823 2.8e-11 73.9 44 70.5
Atru.chr5.315 Acer truncatum HOM05D000504 ORTHO05D000403 3.6e-11 73.6 60 61.7
Haze_01071 Corylus avellana HOM05D000660 ORTHO05D003823 6.8e-10 69.3 58 51.7
Hma1.2p1_0061F.1_g033870 Hydrangea macrophylla HOM05D000660 ORTHO05D035069 3.4e-09 67.0 40 75.0
TWI53G0835 Tripterygium wilfordii HOM05D000660 ORTHO05D003823 4.4e-09 66.6 37 78.4
DCAR_023337 Daucus carota HOM05D000660 ORTHO05D003823 7.5e-09 65.9 37 78.4
Os07g0490200 Oryza sativa ssp. japonica HOM05D000660 ORTHO05D003823 7.5e-09 65.9 57 52.6
Haze_01065 Corylus avellana HOM05D000660 ORTHO05D003823 9.8e-09 65.5 43 65.1
Zm00001eb321680 Zea mays HOM05D000660 ORTHO05D003823 1.7e-08 64.7 57 49.1
AL7G38970 Arabidopsis lyrata HOM05D000660 ORTHO05D003823 3.7e-08 63.5 37 70.3


User provided reference genes

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