Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 9.9e-92 340.1 174 100.0
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 8.5e-67 257.3 161 84.5
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.3e-62 243.4 161 80.1
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.8e-56 223.0 161 75.2
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.3e-55 218.8 158 73.4
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 4.4e-55 218.4 162 73.5
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.7e-54 216.5 160 71.2
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.7e-54 216.5 179 68.2
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 2.8e-54 215.7 161 70.2
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 6.3e-54 214.5 158 72.2
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.1e-53 213.8 158 73.4
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.8e-53 213.0 158 72.2
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.8e-53 213.0 158 72.2
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 6.9e-53 211.1 157 70.1
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.4e-52 208.8 159 71.1
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.7e-52 207.6 164 70.7
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.0e-51 207.2 168 67.9
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 8.5e-51 204.1 164 68.3
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.9e-50 203.0 164 69.5
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.2e-50 202.2 161 69.6
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 9.4e-50 200.7 161 68.9
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.6e-49 199.9 160 67.5
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.6e-49 199.9 164 66.5
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.6e-49 199.9 164 65.9
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 2.1e-49 199.5 150 72.0
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.7e-49 199.1 163 65.6
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 4.7e-49 198.4 164 66.5
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 1.0e-48 197.2 150 71.3
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.8e-48 196.4 164 62.8
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 1.1e-47 193.7 159 64.8
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.5e-47 193.4 164 63.4
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 2.6e-47 192.6 160 66.9
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.3e-46 190.3 164 62.2
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 4.8e-46 188.3 164 62.8
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.1e-45 187.2 164 62.2
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.4e-45 186.8 164 61.0
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 9.1e-45 184.1 161 63.4
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 2.0e-44 183.0 164 61.6
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.6e-44 182.6 164 61.6
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 3.5e-44 182.2 153 63.4
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 5.9e-44 181.4 146 65.8
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 5.9e-44 181.4 164 62.2
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 7.7e-44 181.0 163 62.6
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 7.7e-44 181.0 164 59.8
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 7.7e-44 181.0 165 60.6
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.3e-43 180.3 168 60.7
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 2.2e-43 179.5 168 60.1
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 3.8e-43 178.7 158 63.3
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.8e-43 178.7 168 60.1
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 3.8e-43 178.7 150 62.7
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 5.0e-43 178.3 160 61.9
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 5.0e-43 178.3 192 55.7
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 1.9e-42 176.4 151 63.6
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.5e-42 176.0 164 61.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.2e-42 175.3 166 62.7
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 4.2e-42 175.3 155 59.4
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.5e-42 174.9 168 59.5
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 5.5e-42 174.9 168 58.3
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 5.5e-42 174.9 168 58.9
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 5.5e-42 174.9 168 58.9
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 7.2e-42 174.5 168 58.3
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 7.2e-42 174.5 156 63.5
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.6e-41 173.3 190 54.2
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 2.1e-41 172.9 173 57.8
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.1e-41 172.9 168 58.3
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 6.1e-41 171.4 147 63.3
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 8.0e-41 171.0 153 58.2
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 8.0e-41 171.0 157 60.5
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 8.0e-41 171.0 157 59.2
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 1.4e-40 170.2 190 53.2
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 5.2e-40 168.3 164 56.7
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 5.2e-40 168.3 168 56.5
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 5.2e-40 168.3 165 60.0
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.2e-40 168.3 168 58.3
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 8.8e-40 167.5 168 54.8
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.3e-39 165.6 200 53.5
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 4.4e-39 165.2 190 52.6
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 4.4e-39 165.2 164 56.1
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 4.4e-39 165.2 162 56.8
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 5.7e-39 164.9 153 56.9
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.3e-38 163.7 156 58.3
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 2.2e-38 162.9 168 55.4
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.2e-38 162.9 168 55.4
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.2e-38 162.9 168 55.4
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 2.2e-38 162.9 168 55.4
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.2e-38 162.9 168 55.4
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 2.2e-38 162.9 173 56.6
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 2.2e-38 162.9 153 56.2
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.8e-38 162.5 190 54.2
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.8e-38 162.5 162 59.3
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 3.7e-38 162.2 168 54.8
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 4.8e-38 161.8 138 62.3
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.1e-37 160.6 142 63.4
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 3.1e-37 159.1 139 61.2
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 4.1e-37 158.7 127 65.4
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 5.3e-37 158.3 181 51.9
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 7.0e-37 157.9 169 55.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.6e-36 156.8 161 56.5
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.0e-36 156.4 186 53.8
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.7e-36 156.0 157 58.6
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.7e-36 156.0 156 56.4
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.5e-36 155.2 164 56.7
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.0e-35 154.1 149 57.7
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.9e-35 152.5 168 53.6
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.9e-35 152.5 161 56.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 5.0e-35 151.8 161 56.5
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.9e-34 149.8 181 52.5
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 4.2e-34 148.7 163 54.0
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 2.1e-33 146.4 185 51.4
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.8e-32 143.3 131 62.6
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 5.2e-32 141.7 148 52.7
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 4.5e-28 128.6 138 51.4
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.3e-27 127.1 161 47.2
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 3.6e-25 119.0 135 48.9
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.0e-24 117.5 161 44.7
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.4e-24 117.1 95 64.2
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 3.0e-24 115.9 158 45.6
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.2e-24 115.2 126 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 6.8e-24 114.8 161 43.5
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.7e-22 110.2 81 67.9
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 2.4e-21 106.3 100 56.0
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.6e-20 103.6 111 54.1
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 3.6e-17 92.4 55 81.8
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 3.0e-16 89.4 149 36.2
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 3.0e-16 89.4 150 38.0
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.0e-15 86.7 54 77.8
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 9.8e-15 84.3 74 62.2
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 6.4e-14 81.6 65 67.7
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 4.1e-13 79.0 89 48.3
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 1.2e-12 77.4 93 48.4
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 2.7e-12 76.3 50 72.0
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 4.6e-12 75.5 138 37.7
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 6.0e-12 75.1 60 73.3
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.7e-11 73.6 64 62.5
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.9e-10 70.1 74 56.8
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 9.5e-10 67.8 79 48.1
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 3.6e-09 65.9 135 32.6
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 3.4e-07 59.3 99 37.4
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 1.3e-06 57.4 37 75.7


User provided reference genes

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