Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 1.2e-186 656.4 344 100.0
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 6.2e-122 441.4 403 64.0
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 2.0e-112 409.8 368 63.6
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.4e-105 386.3 376 58.2
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 3.1e-105 386.0 410 55.9
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 8.5e-103 377.9 411 54.5
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 2.1e-101 373.2 412 55.6
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 7.9e-101 371.3 416 54.1
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 1.5e-99 367.1 416 52.6
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 4.4e-99 365.5 412 52.9
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.6e-96 357.1 413 52.1
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.3e-95 354.0 440 49.3
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 2.9e-95 352.8 421 52.0
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 7.2e-94 348.2 412 52.4
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 1.2e-93 347.4 384 53.4
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.4e-92 344.0 412 51.7
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.4e-92 344.0 415 52.3
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 6.7e-92 341.7 388 52.8
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 2.2e-90 336.7 418 51.9
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 1.8e-89 333.6 425 49.2
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.8e-89 333.6 414 50.2
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 4.1e-89 332.4 414 50.2
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.3e-89 332.0 379 51.5
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.5e-86 323.2 305 59.3
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 4.7e-85 318.9 410 50.0
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 8.8e-84 314.7 416 49.5
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 2.4e-81 306.6 417 47.7
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 3.1e-81 306.2 376 50.0
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.3e-79 300.8 366 50.8
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 3.8e-79 299.3 415 46.5
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 1.5e-78 297.4 338 50.6
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.5e-78 297.4 473 44.0
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 3.2e-78 296.2 473 44.0
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 5.5e-78 295.4 472 43.4
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 2.1e-77 293.5 422 44.8
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 4.7e-77 292.4 365 48.2
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 6.1e-77 292.0 409 45.5
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.4e-76 290.8 396 47.7
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 2.3e-76 290.0 419 43.7
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 4.0e-76 289.3 398 47.2
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 8.8e-76 288.1 418 48.1
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.8e-74 283.1 408 47.1
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 6.3e-74 282.0 464 44.0
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 8.3e-74 281.6 403 45.7
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.3e-74 281.6 464 43.3
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.4e-73 280.0 462 43.5
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 2.7e-72 276.6 453 42.8
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 3.5e-72 276.2 400 46.8
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.3e-71 274.2 453 42.6
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.5e-70 270.0 341 48.7
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 5.6e-70 268.9 471 42.7
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 9.5e-70 268.1 445 41.8
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 4.7e-69 265.8 413 46.5
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 4.0e-68 262.7 310 52.3
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.2e-67 261.2 354 49.2
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 2.0e-67 260.4 381 45.4
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 3.7e-66 256.1 195 71.3
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 8.3e-66 255.0 422 42.7
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.5e-64 249.6 313 49.8
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 1.7e-63 247.3 459 38.6
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.7e-63 247.3 350 45.1
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.3e-63 246.9 207 66.2
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.1e-62 244.6 196 70.4
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 2.8e-61 240.0 420 41.4
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 4.7e-61 239.2 428 40.2
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.0e-60 238.0 369 45.3
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.1e-60 236.5 194 64.9
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 4.0e-60 236.1 407 43.5
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 6.8e-60 235.3 411 41.4
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.5e-59 234.2 416 39.7
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.5e-59 234.2 194 69.1
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 5.8e-59 232.3 330 46.4
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 2.9e-58 229.9 433 37.6
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.1e-57 228.0 419 40.1
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 2.4e-57 226.9 380 42.9
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 9.2e-57 224.9 464 38.6
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 9.2e-57 224.9 287 48.8
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.0e-56 223.8 432 39.6
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.7e-56 223.4 464 37.3
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 1.5e-54 217.6 357 42.3
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.5e-54 217.6 269 46.1
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 2.5e-54 216.9 173 66.5
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 2.8e-53 213.4 467 36.2
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 4.7e-53 212.6 380 39.7
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.1e-53 211.8 187 62.0
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 8.9e-52 208.4 406 40.4
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 3.7e-50 203.0 195 57.4
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.1e-49 201.4 420 37.1
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 3.5e-48 196.4 195 61.5
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 7.8e-48 195.3 142 75.4
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 1.3e-47 194.5 467 33.6
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 2.3e-47 193.7 472 33.5
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 2.3e-47 193.7 343 41.1
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 3.0e-47 193.4 411 35.5
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.5e-46 191.0 392 38.5
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 4.3e-46 189.5 378 35.2
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 4.7e-45 186.0 428 34.8
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 6.2e-45 185.7 404 34.2
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 3.4e-43 179.9 216 53.7
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 5.8e-43 179.1 194 50.5
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.1e-41 174.9 440 35.0
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 7.1e-41 172.2 196 51.5
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 7.1e-41 172.2 159 61.0
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 9.2e-41 171.8 436 32.1
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 3.5e-40 169.9 202 54.0
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 4.6e-40 169.5 420 35.5
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 3.0e-39 166.8 464 31.9
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 5.1e-39 166.0 421 34.0
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 5.6e-38 162.5 437 33.6
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.8e-37 160.2 112 73.2
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.2e-36 156.0 135 62.2
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 9.3e-33 145.2 387 33.3
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.6e-29 133.3 80 88.8
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 2.7e-24 117.1 225 39.6
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.3e-23 114.8 86 77.9
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.7e-23 114.4 94 64.9
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 3.9e-23 113.2 208 40.9
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 5.1e-23 112.8 210 41.0
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 2.5e-22 110.5 238 36.1
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 7.4e-22 109.0 97 53.6
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.6e-19 100.5 80 68.8
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 5.8e-19 99.4 205 37.6
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 4.9e-18 96.3 81 69.1
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 2.1e-16 90.9 150 38.0
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.6e-16 89.7 86 50.0
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.9e-16 89.0 108 50.0
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 1.3e-15 88.2 72 56.9
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 3.7e-13 80.1 63 68.3
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.7e-13 80.1 68 51.5
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.8e-13 79.7 136 40.4
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.8e-13 79.7 137 40.9
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.8e-12 77.8 62 66.1
Hund16647 Selenicereus undatus HOM05D005648 ORTHO05D007357 3.1e-12 77.0 112 46.4
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.0e-12 76.6 71 53.5
Eucgr.D02395 Eucalyptus grandis HOM05D005648 ORTHO05D029324 3.8e-10 70.1 103 42.7
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 2.5e-09 67.4 82 46.3
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 1.8e-07 61.2 51 64.7
Lalb_Chr10g0096921 Lupinus albus HOM05D005648 ORTHO05D007357 6.7e-07 59.3 67 49.3


User provided reference genes

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