Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 3.0e-87 325.1 159 100.0
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 3.0e-79 298.5 159 93.7
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.2e-73 278.5 160 85.6
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.2e-69 265.8 160 86.2
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 8.3e-69 263.8 161 82.6
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 5.4e-68 261.2 159 83.0
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 2.9e-66 255.4 155 81.9
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.5e-65 253.1 151 85.4
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 3.6e-64 248.4 160 81.9
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 4.7e-64 248.1 160 81.9
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.4e-63 246.5 160 81.2
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.8e-63 246.1 157 79.6
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.0e-63 245.4 159 80.5
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 4.0e-63 245.0 159 80.5
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 4.0e-63 245.0 159 80.5
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 8.8e-63 243.8 160 79.4
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.2e-62 243.4 157 78.3
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 2.6e-62 242.3 151 82.1
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 2.6e-62 242.3 151 82.1
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 3.4e-62 241.9 151 82.1
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 9.8e-62 240.4 155 78.1
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 2.2e-61 239.2 160 79.4
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 4.9e-61 238.0 150 81.3
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.4e-60 236.5 162 77.8
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.8e-60 236.1 159 77.4
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 4.1e-60 235.0 151 79.5
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.2e-59 233.4 166 74.1
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.9e-59 231.1 160 76.2
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 7.7e-59 230.7 168 73.8
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.3e-58 229.9 118 92.4
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.3e-58 229.2 127 89.0
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.3e-58 229.2 216 62.0
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 5.0e-58 228.0 155 74.8
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 6.6e-58 227.6 130 83.8
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 6.6e-58 227.6 160 75.6
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 8.6e-58 227.3 151 78.8
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.1e-57 226.9 116 93.1
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.1e-57 226.9 151 78.1
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.1e-57 226.9 162 75.9
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.5e-57 226.5 150 79.3
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 1.9e-57 226.1 160 74.4
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 9.5e-57 223.8 161 75.8
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 9.5e-57 223.8 121 87.6
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.2e-56 223.4 151 78.8
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.6e-56 223.0 161 73.9
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 3.6e-56 221.9 151 78.1
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 8.0e-56 220.7 157 74.5
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 1.4e-55 219.9 160 73.1
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.4e-55 219.9 160 73.8
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 1.4e-55 219.9 120 86.7
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 2.3e-55 219.2 147 76.9
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 3.0e-55 218.8 158 73.4
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 4.0e-55 218.4 160 73.8
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 4.0e-55 218.4 154 73.4
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 5.2e-55 218.0 161 73.3
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 5.2e-55 218.0 127 83.5
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 8.9e-55 217.2 147 74.8
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 8.9e-55 217.2 156 73.1
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.2e-54 216.9 146 75.3
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.2e-54 216.9 146 75.3
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 1.5e-54 216.5 146 74.7
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.5e-54 216.5 120 85.8
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 2.0e-54 216.1 146 74.7
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 3.4e-54 215.3 159 72.3
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 9.8e-54 213.8 150 76.0
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 9.8e-54 213.8 149 75.2
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.7e-53 213.0 175 68.6
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.7e-53 213.0 174 69.0
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.7e-53 213.0 152 73.7
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 2.9e-53 212.2 147 74.8
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 2.9e-53 212.2 143 76.9
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 4.9e-53 211.5 156 70.5
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 4.9e-53 211.5 142 76.1
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 6.3e-53 211.1 146 73.3
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 8.3e-53 210.7 159 69.2
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.1e-52 210.3 157 71.3
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.4e-52 209.9 159 70.4
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 2.4e-52 209.1 127 81.9
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 3.2e-52 208.8 156 70.5
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 4.1e-52 208.4 160 72.5
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 4.1e-52 208.4 159 69.8
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 4.1e-52 208.4 156 70.5
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 5.4e-52 208.0 127 81.1
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 7.0e-52 207.6 124 83.1
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 7.0e-52 207.6 155 71.0
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 9.2e-52 207.2 159 71.1
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 1.2e-51 206.8 127 81.1
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.6e-51 206.5 126 82.5
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.6e-51 204.9 160 68.8
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 5.9e-51 204.5 156 69.9
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 5.9e-51 204.5 148 71.6
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 5.9e-51 204.5 155 70.3
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.8e-51 204.1 162 69.1
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.8e-51 204.1 120 81.7
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.3e-50 203.4 150 72.0
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.7e-50 203.0 162 69.1
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.7e-50 203.0 127 78.0
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.7e-50 203.0 127 78.0
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 2.9e-50 202.2 158 67.7
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.9e-50 201.8 127 80.3
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.0e-50 201.4 160 68.8
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-49 200.3 141 72.3
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.5e-49 199.9 159 66.0
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.5e-49 199.9 155 69.0
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.5e-49 199.9 162 68.5
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.5e-49 199.1 168 67.9
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.3e-49 198.4 181 64.6
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 5.6e-49 198.0 150 69.3
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 9.5e-49 197.2 163 68.7
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.8e-48 195.7 152 69.1
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 4.0e-47 191.8 151 68.9
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.9e-47 190.7 149 70.5
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.5e-46 189.9 151 68.2
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 2.0e-46 189.5 114 84.2
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.4e-46 188.3 151 68.2
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 4.4e-46 188.3 151 68.2
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 9.8e-46 187.2 139 72.7
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 2.2e-45 186.0 120 77.5
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 2.9e-45 185.7 155 63.2
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 6.4e-45 184.5 159 64.2
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.4e-44 182.6 120 75.0
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.4e-44 182.6 147 65.3
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.6e-43 179.9 144 66.0
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.7e-43 179.1 107 85.0
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.5e-43 178.7 106 85.8
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 3.0e-42 175.6 156 62.8
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.9e-41 172.9 160 61.9
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 4.3e-41 171.8 119 68.9
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.6e-41 171.4 191 53.9
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 2.8e-40 169.1 103 78.6
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 4.7e-40 168.3 154 63.6
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.7e-40 168.3 204 52.5
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 2.3e-39 166.0 116 75.0
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 5.2e-39 164.9 156 57.7
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.2e-38 163.7 148 63.5
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 2.6e-38 162.5 149 61.7
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 3.4e-38 162.2 106 79.2
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 4.4e-38 161.8 123 69.9
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 7.5e-38 161.0 107 73.8
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.2e-37 159.5 127 65.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.2e-37 159.5 127 65.4
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.2e-37 159.5 127 65.4
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 2.2e-37 159.5 147 63.3
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.0e-34 150.6 138 62.3
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.6e-32 143.3 96 75.0
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.1e-31 140.6 129 61.2
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.3e-31 139.4 126 57.9
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 8.9e-31 137.5 128 65.6
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 8.4e-29 131.0 74 87.8
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 6.0e-27 124.8 87 75.9
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.1e-25 120.6 134 52.2
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.5e-25 119.4 77 83.1
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 4.7e-24 115.2 93 68.8
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 3.1e-23 112.5 121 47.9
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.3e-21 107.1 57 87.7
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.3e-21 107.1 57 82.5
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.9e-20 103.2 76 67.1
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 3.2e-20 102.4 76 65.8
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.6e-19 100.1 76 65.8
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 4.6e-19 98.6 142 45.1
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.0e-18 97.4 59 81.4
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 4.4e-14 82.0 47 80.9
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 6.4e-13 78.2 143 33.6
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 3.5e-11 72.4 163 32.5
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 2.8e-08 62.8 39 71.8


User provided reference genes

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