Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 3.2e-98 361.7 175 100.0
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 3.9e-72 275.0 167 79.6
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 4.8e-70 268.1 170 75.3
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 6.3e-70 267.7 166 77.1
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 2.5e-66 255.8 167 70.1
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 4.7e-65 251.5 170 69.4
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.3e-64 249.2 167 71.9
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-63 246.9 167 70.7
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 3.3e-63 245.4 167 71.9
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 3.3e-63 245.4 167 71.9
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.4e-63 245.0 167 71.3
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 5.7e-63 244.6 167 70.1
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 7.4e-63 244.2 170 67.6
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.3e-62 243.4 167 68.9
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.3e-62 243.4 167 68.9
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.7e-62 243.0 167 68.9
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 2.8e-62 242.3 169 68.0
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 4.8e-62 241.5 167 70.1
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.8e-61 239.6 167 70.1
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.8e-61 239.6 169 69.2
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.8e-61 239.6 167 70.7
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 4.1e-61 238.4 167 69.5
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 7.0e-61 237.7 167 65.9
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 9.1e-61 237.3 173 63.6
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.2e-60 236.9 204 59.8
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.0e-60 236.1 167 65.9
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.6e-60 235.7 167 67.7
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.6e-60 235.7 167 67.7
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.6e-60 235.7 173 63.6
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.5e-60 235.3 173 64.2
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 3.5e-60 235.3 167 69.5
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 4.5e-60 235.0 169 70.4
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 4.5e-60 235.0 167 68.3
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.9e-60 234.6 167 67.1
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.0e-59 233.8 173 63.6
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.7e-59 233.0 167 65.9
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.2e-59 232.6 172 63.4
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.2e-59 232.6 167 66.5
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.8e-59 231.9 167 66.5
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 5.0e-59 231.5 169 69.2
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 6.5e-59 231.1 167 62.9
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 8.5e-59 230.7 167 64.7
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 8.5e-59 230.7 167 66.5
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 8.5e-59 230.7 170 64.1
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 8.5e-59 230.7 167 65.9
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.1e-58 230.3 167 66.5
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.5e-58 229.9 127 83.5
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.5e-58 229.9 167 66.5
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 2.5e-58 229.2 167 65.9
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 2.5e-58 229.2 167 65.9
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 4.2e-58 228.4 226 54.0
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 9.4e-58 227.3 167 65.3
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.2e-57 226.9 166 65.7
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 4.7e-57 224.9 170 64.7
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.8e-56 223.0 167 63.5
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 3.0e-56 222.2 168 62.5
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 4.0e-56 221.9 169 65.1
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 5.2e-56 221.5 167 64.7
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 8.8e-56 220.7 168 61.9
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 8.8e-56 220.7 167 63.5
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.5e-55 219.9 167 61.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 3.4e-55 218.8 167 61.1
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 3.4e-55 218.8 167 62.3
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 3.4e-55 218.8 167 64.1
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 5.7e-55 218.0 167 63.5
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 1.7e-54 216.5 167 61.1
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.7e-54 216.5 167 60.5
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 2.2e-54 216.1 171 59.6
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 3.7e-54 215.3 167 61.1
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 3.7e-54 215.3 169 63.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 3.7e-54 215.3 169 63.3
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 3.7e-54 215.3 170 60.0
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 3.7e-54 215.3 167 61.1
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 4.8e-54 214.9 167 61.1
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 4.8e-54 214.9 170 59.4
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 6.3e-54 214.5 168 61.9
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 8.3e-54 214.2 168 61.3
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 8.3e-54 214.2 177 61.0
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.1e-53 213.8 171 60.8
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 1.8e-53 213.0 169 61.5
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 1.8e-53 213.0 169 61.5
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 1.8e-53 213.0 167 59.9
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 7.0e-53 211.1 167 60.5
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 7.0e-53 211.1 172 58.7
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.2e-52 210.3 169 60.9
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.0e-52 209.5 174 58.6
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 2.0e-52 209.5 170 62.4
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 2.7e-52 209.1 172 58.7
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 4.5e-52 208.4 167 62.9
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.1e-50 203.8 169 58.6
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.5e-50 203.4 116 81.0
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.9e-50 203.0 166 60.8
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 4.2e-50 201.8 167 59.9
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 5.5e-50 201.4 167 59.9
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 5.5e-50 201.4 167 59.9
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 5.5e-50 201.4 167 59.9
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 5.5e-50 201.4 168 59.5
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 7.2e-50 201.1 183 58.5
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 2.3e-48 196.1 168 60.1
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 3.0e-48 195.7 172 56.4
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 8.8e-48 194.1 166 59.0
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 4.4e-47 191.8 167 58.1
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 4.4e-47 191.8 168 58.9
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 4.4e-47 191.8 169 59.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 5.7e-47 191.4 167 57.5
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.2e-46 189.5 166 59.0
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 4.9e-46 188.3 167 61.1
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 6.3e-46 188.0 169 58.0
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.8e-45 186.4 116 69.8
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.8e-45 186.4 169 58.0
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 1.2e-44 183.7 167 59.9
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 1.2e-44 183.7 132 65.9
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 7.7e-44 181.0 166 53.0
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.5e-42 176.0 166 51.2
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 3.4e-39 165.6 169 52.1
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.9e-38 161.8 100 74.0
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 6.4e-38 161.4 167 50.3
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 9.2e-37 157.5 171 46.8
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 4.6e-36 155.2 169 49.1
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 2.1e-33 146.4 116 61.2
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 8.0e-33 144.4 132 58.3
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 4.9e-30 135.2 170 43.5
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 8.3e-30 134.4 171 46.2
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 7.0e-29 131.3 173 41.6
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 4.4e-23 112.1 175 37.1
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 7.5e-23 111.3 87 59.8
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 3.7e-22 109.0 170 34.7
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.4e-21 107.1 138 40.6
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.5e-20 102.4 138 39.1
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 1.0e-19 100.9 172 35.5
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.6e-19 98.2 59 69.5
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 7.3e-18 94.7 171 32.7
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.2e-17 91.7 62 64.5
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.4e-16 90.5 98 48.0
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.3e-16 89.7 96 50.0
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 5.2e-16 88.6 64 70.3
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 5.4e-13 78.6 172 30.8
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.1e-12 76.6 47 63.8
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 3.5e-12 75.9 63 58.7
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-11 74.3 53 66.0
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.3e-11 73.2 53 64.2
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.5e-10 70.5 63 55.6
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.9e-10 70.1 46 67.4
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 2.8e-09 66.2 43 69.8
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 5.2e-08 62.0 35 77.1
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.3e-06 57.4 36 72.2
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.7e-06 57.0 49 57.1
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.9e-06 56.2 64 46.9
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 6.4e-06 55.1 46 52.2


User provided reference genes

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