Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 3.0e-249 864.8 454 100.0
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 5.0e-204 714.5 495 77.4
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 5.6e-179 631.3 454 73.8
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.9e-175 619.0 454 74.9
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.9e-175 619.0 454 74.9
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 1.5e-168 596.7 460 70.7
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.4e-166 590.1 456 69.7
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.9e-166 589.7 484 66.9
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 9.3e-166 587.4 459 70.6
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 6.0e-165 584.7 460 69.3
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 2.3e-164 582.8 458 70.5
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 3.0e-164 582.4 461 68.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.9e-164 582.0 445 71.5
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 7.4e-163 577.8 454 68.7
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 4.8e-162 575.1 459 70.4
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 8.2e-162 574.3 456 69.5
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 8.2e-162 574.3 456 68.0
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.4e-161 572.8 456 70.6
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 5.3e-161 571.6 459 68.8
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 5.3e-161 571.6 456 67.5
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 2.6e-160 569.3 459 69.3
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 5.8e-160 568.2 459 69.3
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 7.6e-160 567.8 456 69.3
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.6e-160 567.8 456 69.3
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.2e-159 566.2 456 69.5
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 3.8e-159 565.5 457 68.9
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.8e-159 565.5 456 69.1
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.1e-158 563.9 460 70.0
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-158 563.9 456 69.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.5e-158 562.8 456 68.9
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.1e-157 559.7 457 67.8
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.5e-157 558.9 457 67.8
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 1.3e-156 557.0 456 66.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 5.1e-156 555.1 456 68.6
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.5e-155 553.5 454 68.1
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 3.3e-155 552.4 460 67.4
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 4.3e-155 552.0 460 66.7
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.3e-154 550.4 461 66.2
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 1.6e-154 550.1 456 64.9
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.1e-153 547.4 458 67.9
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 5.3e-153 545.0 460 66.3
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 4.5e-152 542.0 462 66.7
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.9e-152 541.6 449 67.5
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 5.9e-152 541.6 461 64.2
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 7.6e-152 541.2 454 66.7
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.2e-151 539.7 455 64.4
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 5.0e-151 538.5 457 66.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.1e-150 537.3 454 64.8
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.9e-150 536.6 458 66.4
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 2.5e-150 536.2 458 63.8
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.5e-150 536.2 456 65.4
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 3.2e-150 535.8 460 65.4
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 5.5e-150 535.0 456 65.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.2e-149 533.9 459 63.8
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.6e-149 533.5 456 65.8
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.0e-148 530.8 455 65.1
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 6.7e-148 528.1 476 62.8
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 2.5e-147 526.2 456 64.7
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 3.3e-147 525.8 460 63.7
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 7.4e-147 524.6 460 65.0
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 1.7e-146 523.5 493 61.3
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 2.2e-146 523.1 458 62.9
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.8e-146 522.7 448 66.3
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 6.3e-146 521.5 460 64.3
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 8.2e-146 521.2 455 63.5
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 8.2e-146 521.2 455 63.5
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.4e-145 520.4 456 64.3
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 2.4e-145 519.6 462 62.8
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 6.9e-145 518.1 463 63.3
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.2e-144 517.3 461 62.5
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 2.6e-144 516.2 455 64.2
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.8e-143 512.3 454 62.8
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 5.0e-143 511.9 462 62.6
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 8.5e-143 511.1 458 61.6
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.1e-142 510.8 463 63.7
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.1e-141 506.5 458 62.7
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 6.1e-141 505.0 454 61.9
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.0e-140 504.2 495 59.2
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.9e-140 502.3 455 63.1
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.3e-138 497.3 462 61.7
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 2.2e-138 496.5 461 62.7
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 6.3e-138 495.0 457 62.1
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 8.2e-138 494.6 478 59.0
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.3e-135 487.3 456 60.7
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 2.9e-135 486.1 456 60.7
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.0e-135 485.3 454 62.6
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.5e-134 483.0 453 60.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 3.2e-134 482.6 463 59.8
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-133 480.3 463 59.6
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.1e-133 479.9 455 60.0
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.1e-133 479.9 447 62.4
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 2.7e-133 479.6 459 61.9
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.4e-132 477.2 454 59.7
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 2.3e-132 476.5 454 60.1
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 3.0e-132 476.1 457 61.1
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 4.4e-131 472.2 455 62.0
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.4e-129 466.5 457 59.3
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 7.0e-129 464.9 457 59.3
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.2e-128 464.2 456 59.2
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.6e-128 463.8 454 59.3
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.9e-126 456.8 477 56.2
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.7e-122 443.7 447 57.7
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.8e-122 443.0 454 54.8
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.9e-120 435.3 454 55.9
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 8.8e-116 421.4 392 62.2
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.0e-115 420.2 460 55.0
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.4e-113 412.1 310 71.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 8.6e-111 404.8 454 54.0
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.5e-110 404.1 445 53.9
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.5e-110 403.3 402 56.5
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 4.7e-109 399.1 463 54.4
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 4.7e-109 399.1 481 49.9
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 6.1e-109 398.7 395 59.0
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.3e-106 391.0 445 54.2
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 4.3e-102 375.9 468 51.1
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 2.4e-97 360.1 483 49.5
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 4.6e-96 355.9 452 49.8
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 2.3e-95 353.6 323 61.0
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 6.2e-93 345.5 389 53.5
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 4.4e-91 339.3 458 49.3
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 4.6e-88 329.3 313 61.7
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 5.6e-86 322.4 522 43.5
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 2.0e-83 313.9 313 58.8
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.7e-71 274.2 459 45.3
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.9e-70 270.8 459 45.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 5.6e-70 269.2 175 76.6
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 9.3e-65 251.9 214 65.0
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 6.0e-64 249.2 262 54.6
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 6.0e-64 249.2 262 54.6
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.0e-59 234.2 374 47.1
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.1e-55 219.5 151 73.5
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 6.9e-52 209.1 325 44.3
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.2e-43 181.8 210 51.4
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.4e-43 180.3 322 44.4
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.4e-36 158.3 123 65.0
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.0e-34 152.1 144 57.6
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.0e-34 152.1 144 57.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.2e-34 151.0 105 74.3
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.4e-33 148.3 128 57.8
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 6.1e-32 142.9 181 50.3
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.4e-31 141.7 253 43.5
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.1e-31 139.8 97 73.2
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 7.4e-30 136.0 69 92.8
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 9.7e-30 135.6 74 85.1
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.2e-29 134.4 124 60.5
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 6.9e-28 129.4 101 66.3
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 2.5e-25 120.9 68 82.4
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.8e-21 106.7 137 48.9
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 1.4e-17 95.1 447 26.0
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 5.2e-15 86.7 62 72.6
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 4.8e-13 80.1 91 54.9
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 1.0e-10 72.4 69 60.9
Cre02.g105287 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D008521 7.5e-06 56.2 59 45.8


User provided reference genes

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