Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.7e-238 828.9 413 100.0
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 8.1e-209 730.3 386 94.0
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 6.0e-196 687.6 409 84.6
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 2.4e-192 675.6 409 83.6
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 6.4e-190 667.5 409 82.6
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 6.0e-188 661.0 423 79.9
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 7.9e-188 660.6 395 85.8
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.9e-187 658.3 456 75.2
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 8.7e-187 657.1 409 81.7
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.6e-183 645.6 412 78.9
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.3e-182 643.3 412 78.4
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.3e-182 643.3 402 81.3
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.1e-181 640.2 426 76.3
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.9e-181 639.4 409 78.5
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.5e-181 639.0 403 80.6
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 4.2e-181 638.3 409 78.7
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.5e-180 635.2 403 80.4
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 7.9e-180 634.0 403 80.1
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.3e-179 633.3 407 78.6
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.8e-179 632.9 409 78.5
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 8.7e-179 630.6 400 80.5
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 7.4e-178 627.5 403 77.2
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.4e-176 623.2 375 82.9
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 2.4e-176 622.5 405 76.8
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 6.9e-176 620.9 405 76.8
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.0e-175 619.4 372 84.4
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.6e-175 619.0 413 78.0
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 7.6e-175 617.5 444 72.7
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.0e-174 617.1 410 75.1
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.0e-174 617.1 410 75.1
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.0e-174 617.1 398 77.1
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.0e-174 617.1 398 77.4
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.3e-174 616.7 405 77.8
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 1.7e-174 616.3 405 76.0
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 2.2e-174 615.9 373 82.8
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 8.4e-174 614.0 370 81.6
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.1e-173 613.6 350 85.1
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.1e-173 613.6 350 85.1
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-173 613.6 405 75.8
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 2.5e-173 612.5 373 81.0
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 3.2e-173 612.1 408 75.7
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 3.2e-173 612.1 404 75.5
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 2.1e-172 609.4 395 78.5
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.7e-172 609.0 441 71.9
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 7.9e-172 607.4 408 75.7
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.0e-171 607.1 403 76.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.3e-171 606.7 403 76.4
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 3.9e-171 605.1 389 78.9
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 5.1e-171 604.7 387 76.7
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 6.7e-171 604.4 375 81.3
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 8.7e-171 604.0 395 76.7
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.5e-170 603.2 378 78.3
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.9e-170 602.8 353 85.0
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.9e-170 602.8 387 76.5
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.5e-170 602.4 387 76.7
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.5e-170 602.4 398 76.4
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.3e-170 602.1 391 77.7
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 3.3e-170 602.1 408 76.5
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 4.3e-170 601.7 388 78.4
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 4.3e-170 601.7 373 79.6
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 5.7e-170 601.3 388 78.6
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 7.4e-170 600.9 346 85.3
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 7.4e-170 600.9 383 79.1
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 7.4e-170 600.9 345 86.1
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.6e-169 599.7 391 77.5
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.8e-169 599.0 390 79.0
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 8.2e-169 597.4 401 75.1
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.8e-168 596.3 408 75.5
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.1e-168 595.1 338 86.4
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 6.9e-168 594.3 403 74.9
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 6.9e-168 594.3 409 73.1
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 6.9e-168 594.3 402 74.9
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 6.9e-168 594.3 435 70.8
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.2e-167 593.6 441 69.8
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.2e-167 593.6 394 75.4
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 3.4e-167 592.0 398 75.6
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 3.4e-167 592.0 401 75.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.4e-167 592.0 373 79.1
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 4.5e-167 591.7 345 84.6
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 5.9e-167 591.3 397 75.1
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 5.9e-167 591.3 375 78.7
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 1.0e-166 590.5 409 73.6
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.3e-166 590.1 334 86.5
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 2.2e-166 589.3 394 75.4
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.2e-166 589.3 411 73.7
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 2.2e-166 589.3 394 75.4
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.9e-166 589.0 388 77.1
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 5.0e-166 588.2 401 74.8
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 5.0e-166 588.2 408 72.5
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 8.5e-166 587.4 403 73.9
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.1e-165 587.0 373 78.8
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.1e-165 587.0 405 74.3
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.9e-165 586.3 342 83.3
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.9e-165 586.3 403 73.7
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.5e-165 585.9 399 74.9
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 4.2e-165 585.1 343 84.0
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.6e-164 583.2 388 76.0
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 2.3e-163 579.3 399 72.9
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 3.9e-163 578.6 388 75.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.8e-163 577.4 410 72.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.5e-162 575.9 330 84.8
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 5.7e-162 574.7 395 74.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 3.7e-161 572.0 449 67.9
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.4e-160 570.1 335 83.6
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 6.9e-160 567.8 340 81.2
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.2e-158 562.8 351 80.6
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.8e-158 562.0 340 80.6
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.2e-157 558.9 342 79.2
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 5.5e-157 558.1 346 79.8
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.6e-156 556.6 346 79.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.0e-155 553.9 342 80.4
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.4e-155 553.5 376 76.6
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 3.3e-154 548.9 403 70.7
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.2e-153 546.2 346 79.2
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.7e-153 545.4 345 77.7
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 9.1e-152 540.8 409 69.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 4.5e-151 538.5 416 67.8
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.2e-148 530.4 309 83.8
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 2.7e-148 529.3 274 93.4
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 4.0e-147 525.4 279 90.3
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.7e-145 520.0 400 69.2
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 2.8e-145 519.2 274 91.2
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 9.1e-144 514.2 335 77.3
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 7.2e-141 504.6 331 76.7
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 9.4e-141 504.2 383 68.9
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.2e-140 503.8 356 69.4
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 8.8e-139 497.7 332 72.9
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.5e-135 485.3 456 58.8
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 5.9e-135 485.0 420 60.5
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 7.7e-135 484.6 415 59.3
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.9e-134 482.6 385 65.7
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 5.0e-134 481.9 335 71.9
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 7.2e-133 478.0 423 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 3.6e-132 475.7 330 69.7
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.1e-124 449.9 368 64.4
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 4.1e-120 435.6 410 55.4
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.6e-117 425.2 478 53.3
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.8e-115 418.3 387 59.9
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.6e-108 396.0 396 56.1
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.9e-107 391.3 357 59.9
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.4e-104 382.1 289 67.8
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.5e-101 374.0 356 53.4
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 7.6e-98 361.7 337 55.2
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.1e-96 357.8 312 60.3
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.2e-81 307.0 167 91.0
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 3.4e-74 283.1 259 56.0
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.4e-64 251.1 343 47.2
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.5e-53 214.5 377 37.9
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.3e-41 174.9 398 34.2
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.9e-38 163.3 120 70.8
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.7e-33 147.9 114 69.3
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 4.7e-31 139.8 166 47.6
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.0e-29 134.4 81 79.0
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-26 125.2 169 46.2
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.0e-22 112.1 107 59.8
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 4.0e-22 110.2 146 45.9
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 4.7e-15 86.7 89 51.7
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 4.0e-14 83.6 99 51.5
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.3e-09 68.6 282 25.2
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.7e-09 68.2 208 24.5
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.6e-09 65.9 195 27.2
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 8.6e-09 65.9 304 24.3
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.1e-08 65.5 199 26.6
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.1e-08 65.5 199 26.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.1e-08 65.5 199 26.6
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 1.1e-08 65.5 199 26.6
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.2e-07 62.0 368 22.3
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-07 61.6 202 24.3
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.1e-07 61.2 199 23.6
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 2.8e-07 60.8 199 23.6
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 8.0e-07 59.3 199 25.6
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 1.0e-06 58.9 199 24.1
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 3.0e-06 57.4 204 24.0


User provided reference genes

Program Settings