Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41748 Davidia involucrata HOM05D003498 ORTHO05D184261 5.6e-33 143.7 72 100.0
Dinv33373 Davidia involucrata HOM05D003498 ORTHO05D004191 2.1e-11 72.0 37 91.9
Hma1.2p1_0279F.1_g112380 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 6.7e-10 67.0 37 83.8
MD17G1016300 Malus domestica HOM05D003498 ORTHO05D004191 6.7e-10 67.0 37 78.4
Prupe.3G071800 Prunus persica HOM05D003498 ORTHO05D004191 6.7e-10 67.0 37 78.4
Prupe.3G301400 Prunus persica HOM05D003498 ORTHO05D004191 6.7e-10 67.0 37 78.4
DCAR_027394 Daucus carota HOM05D003498 ORTHO05D004191 8.8e-10 66.6 40 77.5
Lj7A607T30 Lonicera japonica HOM05D003498 ORTHO05D004191 1.1e-09 66.2 37 81.1
CSS0006967 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.5e-09 65.1 38 78.9
CSS0031931 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 3.3e-09 64.7 37 81.1
QL02p026417 Quercus lobata HOM05D003498 ORTHO05D004191 3.3e-09 64.7 37 78.4
QL93p1517_0005 Quercus lobata HOM05D003498 ORTHO05D004191 3.3e-09 64.7 37 78.4
Actinidia05930 Actinidia chinensis HOM05D003498 ORTHO05D004191 4.3e-09 64.3 37 78.4
Actinidia38210 Actinidia chinensis HOM05D003498 ORTHO05D004191 4.3e-09 64.3 37 75.7
Nitab4.5_0000441g0220 Nicotiana tabacum HOM05D003498 ORTHO05D004191 4.3e-09 64.3 40 77.5
PGR083G1382 Punica granatum HOM05D003498 ORTHO05D004191 4.3e-09 64.3 37 75.7
Actinidia18419 Actinidia chinensis HOM05D003498 ORTHO05D004191 5.7e-09 63.9 40 72.5
CSS0027983 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 7.4e-09 63.5 36 80.6
Dinv27202 Davidia involucrata HOM05D003498 ORTHO05D004191 7.4e-09 63.5 37 78.4
PGR083G2492 Punica granatum HOM05D003498 ORTHO05D004191 7.4e-09 63.5 37 78.4
Ciclev10016330m.g Citrus clementina HOM05D003498 ORTHO05D004191 9.7e-09 63.2 37 75.7
Cc07_g00530 Coffea canephora HOM05D003498 ORTHO05D004191 9.7e-09 63.2 40 75.0
Gohir.A11G167100 Gossypium hirsutum HOM05D003498 ORTHO05D004191 9.7e-09 63.2 37 75.7
Gorai.007G185700 Gossypium raimondii HOM05D003498 ORTHO05D004191 9.7e-09 63.2 37 75.7
Rhsim10G0009900 Rhododendron simsii HOM05D003498 ORTHO05D004191 9.7e-09 63.2 37 78.4
CANSAT56G0570 Cannabis sativa HOM05D003498 ORTHO05D004191 1.3e-08 62.8 37 75.7
Peaxi162Scf00776g00325 Petunia axillaris HOM05D003498 ORTHO05D004191 1.3e-08 62.8 40 75.0
Cc06_g23000 Coffea canephora HOM05D003498 ORTHO05D004191 1.7e-08 62.4 40 75.0
Gorai.001G085600 Gossypium raimondii HOM05D003498 ORTHO05D004191 1.7e-08 62.4 37 70.3
CiPaw.07G235500 Carya illinoinensis HOM05D003498 ORTHO05D004191 2.2e-08 62.0 37 73.0
Gohir.D11G173400 Gossypium hirsutum HOM05D003498 ORTHO05D004191 2.2e-08 62.0 37 73.0
MBI11_g00914_MAGBIO Magnolia biondii HOM05D003498 ORTHO05D004191 2.2e-08 62.0 37 73.0
TWI36G0082 Tripterygium wilfordii HOM05D003498 ORTHO05D004191 2.2e-08 62.0 37 73.0
GSVIVG01001834001 Vitis vinifera HOM05D003498 ORTHO05D004191 2.2e-08 62.0 37 73.0
Atru.chr10.1225 Acer truncatum HOM05D003498 ORTHO05D004191 2.8e-08 61.6 37 75.7
CSS0032491 Camellia sinensis var. sinensis HOM05D003498 ORTHO05D004191 2.8e-08 61.6 37 78.4
Cpa.g.sc802.1 Carica papaya HOM05D003498 ORTHO05D004191 2.8e-08 61.6 40 70.0
Duzib133G0132 Durio zibethinus HOM05D003498 ORTHO05D004191 2.8e-08 61.6 37 70.3
Thecc.04G123800 Theobroma cacao HOM05D003498 ORTHO05D004191 2.8e-08 61.6 37 70.3
vmacro05933 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 2.8e-08 61.6 37 75.7
Manes.14G169300 Manihot esculenta HOM05D003498 ORTHO05D004191 4.8e-08 60.8 37 73.0
Manes.14G170700 Manihot esculenta HOM05D003498 ORTHO05D004191 4.8e-08 60.8 37 73.0
Nitab4.5_0002877g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 4.8e-08 60.8 40 72.5
PSO541G3815 Papaver somniferum HOM05D003498 ORTHO05D004191 4.8e-08 60.8 37 70.3
vmacro18322 Vaccinium macrocarpon HOM05D003498 ORTHO05D004191 4.8e-08 60.8 37 75.7
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 6.3e-08 60.5 35 77.1
Nn3g16542 Nelumbo nucifera HOM05D003498 ORTHO05D004191 6.3e-08 60.5 37 73.0
Nitab4.5_0011275g0010 Nicotiana tabacum HOM05D003498 ORTHO05D004191 6.3e-08 60.5 40 72.5
Oeu001847.2 Olea europaea HOM05D003498 ORTHO05D004191 6.3e-08 60.5 40 72.5
Potri.001G334900 Populus trichocarpa HOM05D003498 ORTHO05D004191 6.3e-08 60.5 37 75.7
THA.LOC104810770 Tarenaya hassleriana HOM05D003498 ORTHO05D004191 6.3e-08 60.5 40 70.0
VMungo1080G1345 Vigna mungo HOM05D003498 ORTHO05D004191 6.3e-08 60.5 40 67.5
Duzib138G0533 Durio zibethinus HOM05D003498 ORTHO05D004191 8.2e-08 60.1 37 67.6
FvH4_6g52930 Fragaria vesca HOM05D003498 ORTHO05D004191 8.2e-08 60.1 37 73.0
FAN02G3013 Fragaria x ananassa HOM05D003498 ORTHO05D004191 8.2e-08 60.1 37 73.0
FAN05G5642 Fragaria x ananassa HOM05D003498 ORTHO05D004191 8.2e-08 60.1 37 73.0
FAN09G1233 Fragaria x ananassa HOM05D003498 ORTHO05D004191 8.2e-08 60.1 37 73.0
FAN14G2218 Fragaria x ananassa HOM05D003498 ORTHO05D004191 8.2e-08 60.1 37 73.0
Ca_01840_v3 Cicer arietinum L. HOM05D003498 ORTHO05D004191 1.1e-07 59.7 40 65.0
ECA238G3044 Erigeron canadensis HOM05D003498 ORTHO05D004191 1.1e-07 59.7 37 73.0
Hma1.2p1_1219F.1_g267800 Hydrangea macrophylla HOM05D003498 ORTHO05D004191 1.1e-07 59.7 37 67.6
MD09G1015900 Malus domestica HOM05D003498 ORTHO05D004191 1.1e-07 59.7 37 70.3
PSO170G3520 Papaver somniferum HOM05D003498 ORTHO05D004191 1.1e-07 59.7 37 70.3
PSO210G3977 Papaver somniferum HOM05D003498 ORTHO05D004191 1.1e-07 59.7 37 70.3
TAR374G1609 Trochodendron aralioides HOM05D003498 ORTHO05D004191 1.1e-07 59.7 37 70.3
Aqoxy3G02772 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 1.4e-07 59.3 37 67.6
Lalb_Chr10g0095001 Lupinus albus HOM05D003498 ORTHO05D004191 1.4e-07 59.3 40 62.5
PSO675G6488 Papaver somniferum HOM05D003498 ORTHO05D004191 1.4e-07 59.3 37 70.3
SGA_v2.0_scaffold47G17560 Striga asiatica HOM05D003498 ORTHO05D004191 1.4e-07 59.3 40 65.0
TPR.G16146 Trifolium pratense HOM05D003498 ORTHO05D004191 1.4e-07 59.3 43 62.8
TAR622G0600 Trochodendron aralioides HOM05D003498 ORTHO05D004191 1.4e-07 59.3 36 72.2
arahy.Tifrunner.gnm1.ann1.82NANE Arachis hypogaea HOM05D003498 ORTHO05D004191 1.8e-07 58.9 37 70.3
arahy.Tifrunner.gnm1.ann1.C6G3CE Arachis hypogaea HOM05D003498 ORTHO05D004191 1.8e-07 58.9 37 70.3
arahy.Tifrunner.gnm1.ann1.IHQ30F Arachis hypogaea HOM05D003498 ORTHO05D004191 1.8e-07 58.9 40 65.0
arahy.Tifrunner.gnm1.ann1.MGT28Z Arachis hypogaea HOM05D003498 ORTHO05D004191 1.8e-07 58.9 40 65.0
CAN.G1461.1 Capsicum annuum HOM05D003498 ORTHO05D004191 1.8e-07 58.9 40 72.5
Cfa012954 Carpinus fangiana HOM05D002694 ORTHO05D002927 1.8e-07 58.9 37 73.0
Oeu001405.1 Olea europaea HOM05D003498 ORTHO05D004191 1.8e-07 58.9 40 72.5
Sc07g0003610 Simmondsia chinensis HOM05D003498 ORTHO05D004191 1.8e-07 58.9 37 64.9
MSTRG.15556 Avicennia marina HOM05D003498 ORTHO05D004191 2.4e-07 58.5 40 65.0
Eucgr.A01374 Eucalyptus grandis HOM05D003498 ORTHO05D004191 2.4e-07 58.5 37 67.6
Peaxi162Scf00147g01820 Petunia axillaris HOM05D003498 ORTHO05D004191 2.4e-07 58.5 40 70.0
Phvul.005G072200 Phaseolus vulgaris HOM05D003498 ORTHO05D004191 2.4e-07 58.5 40 65.0
RcHm_v2.0_Chr2g0174641 Rosa chinensis HOM05D003498 ORTHO05D004191 2.4e-07 58.5 37 73.0
Sed0009078 Sechium edule HOM05D003498 ORTHO05D004191 2.4e-07 58.5 40 70.0
SEGI_21909 Sequoiadendron giganteum HOM05D003498 ORTHO05D004191 2.4e-07 58.5 37 62.2
Solyc07g048010.4 Solanum lycopersicum HOM05D003498 ORTHO05D004191 2.4e-07 58.5 40 72.5
Sopen07g024440 Solanum pennellii HOM05D003498 ORTHO05D004191 2.4e-07 58.5 40 72.5
PGSC0003DMG400006157 Solanum tuberosum HOM05D003498 ORTHO05D004191 2.4e-07 58.5 40 72.5
HanXRQChr14g0450941 Helianthus annuus HOM05D003498 ORTHO05D004191 3.1e-07 58.2 37 73.0
Lsat_1_v5_gn_2_32401 Lactuca sativa HOM05D003498 ORTHO05D004191 3.1e-07 58.2 37 70.3
Lj1g0028146 Lotus japonicus HOM05D003498 ORTHO05D004191 3.1e-07 58.2 40 65.0
Nitab4.5_0005699g0040 Nicotiana tabacum HOM05D003498 ORTHO05D004191 3.1e-07 58.2 40 70.0
Psat5g244520 Pisum sativum HOM05D003498 ORTHO05D004191 3.1e-07 58.2 40 65.0
QL02p008668 Quercus lobata HOM05D003498 ORTHO05D004191 3.1e-07 58.2 37 64.9
Rhsim08G0045600 Rhododendron simsii HOM05D003498 ORTHO05D004191 3.1e-07 58.2 37 67.6
TPR.G38988 Trifolium pratense HOM05D003498 ORTHO05D004191 3.1e-07 58.2 40 65.0
CiPaw.08G003000 Carya illinoinensis HOM05D003498 ORTHO05D004191 4.1e-07 57.8 37 73.0
Lj5g0005525 Lotus japonicus HOM05D003498 ORTHO05D004191 4.1e-07 57.8 40 65.0
Zm00001eb109870 Zea mays HOM05D003498 ORTHO05D004191 4.1e-07 57.8 37 64.9
Zm00001eb208950 Zea mays HOM05D003498 ORTHO05D004191 4.1e-07 57.8 39 64.1
AL8G35910 Arabidopsis lyrata HOM05D003498 ORTHO05D004191 5.3e-07 57.4 43 62.8
CARHR285810 Cardamine hirsuta HOM05D003498 ORTHO05D004191 5.3e-07 57.4 43 62.8
Hund09045 Selenicereus undatus HOM05D003498 ORTHO05D004191 5.3e-07 57.4 37 67.6
TPR.G5710 Trifolium pratense HOM05D003498 ORTHO05D004191 5.3e-07 57.4 38 65.8
Aa31LG1G11800 Aethionema arabicum HOM05D003498 ORTHO05D004191 6.9e-07 57.0 43 62.8
Ah.01g001720 Amaranthus hybridus HOM05D003498 ORTHO05D004191 6.9e-07 57.0 37 62.2
Aqoxy51s003 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 6.9e-07 57.0 37 64.9
Aqoxy7G03334 Aquilegia oxysepala HOM05D003498 ORTHO05D004191 6.9e-07 57.0 37 64.9
Medtr0274s0020 Medicago truncatula HOM05D003498 ORTHO05D004191 6.9e-07 57.0 40 62.5
Sabra16G0216000 Salix brachista HOM05D003498 ORTHO05D004191 6.9e-07 57.0 37 70.3
Glyma.13G277200 Glycine max HOM05D003498 ORTHO05D004191 9.1e-07 56.6 38 68.4
Lsat_1_v5_gn_2_93800 Lactuca sativa HOM05D003498 ORTHO05D004191 9.1e-07 56.6 37 67.6
Medtr0271s0030 Medicago truncatula HOM05D003498 ORTHO05D004191 9.1e-07 56.6 39 66.7
Os07g0639900 Oryza sativa ssp. japonica HOM05D003498 ORTHO05D004191 1.2e-06 56.2 37 62.2
SGA_v2.0_scaffold68G22828 Striga asiatica HOM05D003498 ORTHO05D004191 1.2e-06 56.2 40 62.5
ATR1120G052 Amborella trichopoda HOM05D003498 ORTHO05D004191 1.5e-06 55.8 37 64.9
Migut.K01441 Erythranthe guttata HOM05D003498 ORTHO05D004191 1.5e-06 55.8 40 62.5
Medtr1g092440 Medicago truncatula HOM05D000397 ORTHO05D004191 1.5e-06 55.8 40 65.0
EL10Ac9g22898 Beta vulgaris HOM05D003498 ORTHO05D004191 2.0e-06 55.5 40 60.0
BraA10t43747Z Brassica rapa HOM05D003498 ORTHO05D004191 2.0e-06 55.5 43 58.1
Carub.0008s2011 Capsella rubella HOM05D003498 ORTHO05D004191 2.0e-06 55.5 43 62.8
ClCG07G012360 Citrullus lanatus HOM05D003498 ORTHO05D004191 2.6e-06 55.1 40 60.0
Thhalv10014606m.g Eutrema salsugineum HOM05D003498 ORTHO05D004191 2.6e-06 55.1 43 60.5
Manes.06G007550 Manihot esculenta HOM05D003498 ORTHO05D004191 2.6e-06 55.1 37 67.6
Zm00001eb248420 Zea mays HOM05D003498 ORTHO05D004191 3.4e-06 54.7 39 61.5
A10p16650 Brassica napus HOM05D000758 ORTHO05D004191 4.5e-06 54.3 43 55.8
C09p51820 Brassica napus HOM05D000758 ORTHO05D001216 4.5e-06 54.3 43 55.8
Sp6g21120 Schrenkiella parvula HOM05D003498 ORTHO05D004191 4.5e-06 54.3 40 60.0
AT5G59440 Arabidopsis thaliana HOM05D003498 ORTHO05D004191 5.9e-06 53.9 40 62.5
BcaB08g36258 Brassica carinata HOM05D003498 ORTHO05D004191 5.9e-06 53.9 43 58.1
PSO384G2342 Papaver somniferum HOM05D003498 ORTHO05D004191 5.9e-06 53.9 36 63.9
BcaC04g19772 Brassica carinata HOM05D003498 ORTHO05D004191 7.7e-06 53.5 43 55.8
BolC9t58046H Brassica oleracea HOM05D000758 ORTHO05D004191 7.7e-06 53.5 43 55.8
AUR62012870 Chenopodium quinoa HOM05D003498 ORTHO05D004191 7.7e-06 53.5 40 60.0
AUR62017642 Chenopodium quinoa HOM05D003498 ORTHO05D004191 7.7e-06 53.5 40 60.0
AUR62043688 Chenopodium quinoa HOM05D003498 ORTHO05D004191 7.7e-06 53.5 40 60.0
TPR.G22201 Trifolium pratense HOM05D003498 ORTHO05D004191 7.7e-06 53.5 35 65.7
unitig_748.g7053 Utricularia gibba HOM05D003498 ORTHO05D004191 7.7e-06 53.5 40 62.5


User provided reference genes

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