Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41690 Davidia involucrata HOM05D005981 ORTHO05D007551 1.0e-129 466.8 256 100.0
CSS0046436 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 1.9e-59 233.4 221 66.5
CSS0002602 Camellia sinensis var. sinensis HOM05D005981 ORTHO05D007551 6.8e-57 224.9 218 61.0
Actinidia23324 Actinidia chinensis HOM05D005981 ORTHO05D007551 4.6e-53 212.2 168 67.9
GSVIVG01034499001 Vitis vinifera HOM05D005981 ORTHO05D007551 1.2e-50 204.1 176 63.6
CiPaw.16G062400 Carya illinoinensis HOM05D005981 ORTHO05D007551 6.9e-49 198.4 162 64.2
Thecc.08G202800 Theobroma cacao HOM05D005981 ORTHO05D007551 9.0e-49 198.0 166 65.1
Duzib177G0330 Durio zibethinus HOM05D005981 ORTHO05D007551 1.2e-48 197.6 164 62.8
TAR381G0932 Trochodendron aralioides HOM05D005981 ORTHO05D007551 3.4e-48 196.1 164 66.5
Gohir.A05G274500 Gossypium hirsutum HOM05D005981 ORTHO05D007551 7.6e-48 194.9 164 62.8
Gorai.009G289700 Gossypium raimondii HOM05D005981 ORTHO05D007551 9.9e-48 194.5 164 62.2
Gohir.D05G276700 Gossypium hirsutum HOM05D005981 ORTHO05D007551 1.1e-46 191.0 164 61.6
arahy.Tifrunner.gnm1.ann1.VB64T6 Arachis hypogaea HOM05D005981 ORTHO05D007551 3.2e-46 189.5 145 65.5
arahy.Tifrunner.gnm1.ann1.SEU8EV Arachis hypogaea HOM05D005981 ORTHO05D007551 5.4e-46 188.7 145 65.5
PGR119G0141 Punica granatum HOM05D005981 ORTHO05D007551 5.4e-46 188.7 165 61.8
QL02p034064 Quercus lobata HOM05D005981 ORTHO05D007551 9.3e-46 188.0 166 62.0
Manes.18G100000 Manihot esculenta HOM05D005981 ORTHO05D007551 2.1e-45 186.8 176 60.2
Ciclev10001512m.g Citrus clementina HOM05D005981 ORTHO05D007551 1.3e-44 184.1 172 62.2
SGA_v2.0_scaffold118G32466 Striga asiatica HOM05D005981 ORTHO05D007551 1.3e-44 184.1 119 74.8
Prupe.8G055700 Prunus persica HOM05D005981 ORTHO05D007551 2.3e-44 183.3 177 57.6
Potri.013G114400 Populus trichocarpa HOM05D005981 ORTHO05D007551 3.9e-44 182.6 178 58.4
Lj2g0016315 Lotus japonicus HOM05D005981 ORTHO05D007551 5.1e-44 182.2 138 65.2
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 5.1e-44 182.2 165 64.2
MD10G1046800 Malus domestica HOM05D005981 ORTHO05D007551 1.9e-43 180.3 176 54.5
FAN20G1782 Fragaria x ananassa HOM05D005981 ORTHO05D007551 3.3e-43 179.5 170 58.2
FvH4_2g12160 Fragaria vesca HOM05D005981 ORTHO05D007551 5.6e-43 178.7 170 57.6
Atru.chr13.1806 Acer truncatum HOM05D005981 ORTHO05D007551 7.3e-43 178.3 169 57.4
Lsat_1_v5_gn_1_10481 Lactuca sativa HOM05D005981 ORTHO05D007551 7.3e-43 178.3 166 61.4
FAN27G0258 Fragaria x ananassa HOM05D005981 ORTHO05D007551 1.3e-42 177.6 170 57.1
Aqoxy5G02601 Aquilegia oxysepala HOM05D005981 ORTHO05D007551 1.6e-42 177.2 156 60.9
Glyma.16G156300 Glycine max HOM05D005981 ORTHO05D007551 2.1e-42 176.8 158 58.2
Atru.chr13.1816 Acer truncatum HOM05D005981 ORTHO05D007551 3.6e-42 176.0 169 56.8
Eucgr.F04135 Eucalyptus grandis HOM05D005981 ORTHO05D007551 6.2e-42 175.3 166 59.0
FAN24G2303 Fragaria x ananassa HOM05D005981 ORTHO05D007551 1.8e-41 173.7 170 56.5
Solyc11g017230.2 Solanum lycopersicum HOM05D005981 ORTHO05D007551 2.4e-41 173.3 159 58.5
CANSAT56G4197 Cannabis sativa HOM05D005981 ORTHO05D007551 4.0e-41 172.6 169 56.8
HanXRQChr04g0107411 Helianthus annuus HOM05D005981 ORTHO05D007551 5.3e-41 172.2 156 57.1
Phvul.004G084494 Phaseolus vulgaris HOM05D005981 ORTHO05D007551 9.0e-41 171.4 114 73.7
MSTRG.1511 Avicennia marina HOM05D005981 ORTHO05D007551 1.5e-40 170.6 116 70.7
Sopen11g009130 Solanum pennellii HOM05D005981 ORTHO05D007551 1.5e-40 170.6 159 57.9
ClCG11G008230 Citrullus lanatus HOM05D005981 ORTHO05D007551 7.6e-40 168.3 166 57.8
Lalb_Chr03g0035891 Lupinus albus HOM05D005981 ORTHO05D007551 7.6e-40 168.3 155 58.1
Cc00_g04830 Coffea canephora HOM05D005981 ORTHO05D007551 9.9e-40 167.9 114 69.3
Lj7A293G47 Lonicera japonica HOM05D005981 ORTHO05D007551 9.9e-40 167.9 234 43.6
RcHm_v2.0_Chr6g0272141 Rosa chinensis HOM05D005981 ORTHO05D007551 1.3e-39 167.5 166 56.6
PSO017G5512 Papaver somniferum HOM05D005981 ORTHO05D007551 2.9e-39 166.4 169 56.2
Migut.C01243 Erythranthe guttata HOM05D005981 ORTHO05D007551 4.9e-39 165.6 113 71.7
CAN.G61.32 Capsicum annuum HOM05D005981 ORTHO05D007551 3.2e-38 162.9 118 67.8
MBI17_g15293_MAGBIO Magnolia biondii HOM05D005981 ORTHO05D007551 1.2e-37 161.0 155 56.8
MELO3C008115.2 Cucumis melo HOM05D005981 ORTHO05D007551 2.7e-37 159.8 166 54.8
Hund27079 Selenicereus undatus HOM05D005981 ORTHO05D007551 6.0e-37 158.7 149 57.7
Sc23g0001130 Simmondsia chinensis HOM05D005981 ORTHO05D007551 2.3e-36 156.8 169 55.0
EL10Ac1g00070 Beta vulgaris HOM05D005981 ORTHO05D007551 3.0e-36 156.4 161 50.3
CARHR033840 Cardamine hirsuta HOM05D005981 ORTHO05D007551 3.9e-36 156.0 172 53.5
Carub.0001s3253 Capsella rubella HOM05D005981 ORTHO05D007551 1.5e-35 154.1 175 52.0
AT1G34380 Arabidopsis thaliana HOM05D005981 ORTHO05D007551 1.9e-35 153.7 174 52.9
Sp1g29600 Schrenkiella parvula HOM05D005981 ORTHO05D007551 1.9e-35 153.7 179 49.7
Sed0004103 Sechium edule HOM05D005981 ORTHO05D007551 1.9e-35 153.7 166 55.4
CsaV3_2G033430 Cucumis sativus L. HOM05D005981 ORTHO05D007551 2.5e-35 153.3 122 62.3
Nitab4.5_0006099g0030 Nicotiana tabacum HOM05D005981 ORTHO05D007551 5.6e-35 152.1 171 51.5
TPR.G36660 Trifolium pratense HOM05D005981 ORTHO05D007551 7.4e-35 151.8 114 67.5
Psat1g098600 Pisum sativum HOM05D005981 ORTHO05D007551 9.6e-35 151.4 114 66.7
Nitab4.5_0000159g0230 Nicotiana tabacum HOM05D005981 ORTHO05D007551 1.3e-34 151.0 116 65.5
ATR1134G043 Amborella trichopoda HOM05D005981 ORTHO05D007551 1.6e-34 150.6 138 58.0
BcaC08g43776 Brassica carinata HOM05D005981 ORTHO05D007551 1.6e-34 150.6 156 53.2
BolC6t36287H Brassica oleracea HOM05D005981 ORTHO05D007551 1.6e-34 150.6 156 53.2
AUR62023576 Chenopodium quinoa HOM05D005981 ORTHO05D007551 1.6e-34 150.6 160 48.8
A09p32090 Brassica napus HOM05D005981 ORTHO05D007551 4.8e-34 149.1 156 53.2
AUR62004659 Chenopodium quinoa HOM05D005981 ORTHO05D007551 1.4e-33 147.5 160 47.5
Medtr6g033525 Medicago truncatula HOM05D005981 ORTHO05D007551 1.4e-33 147.5 131 58.8
THA.LOC104806782 Tarenaya hassleriana HOM05D005981 ORTHO05D007551 1.4e-33 147.5 163 49.7
C06p11540 Brassica napus HOM05D005981 ORTHO05D007551 1.8e-33 147.1 156 51.9
Thhalv10008072m.g Eutrema salsugineum HOM05D005981 ORTHO05D007551 2.4e-33 146.7 170 50.0
Aa31LG6G8450 Aethionema arabicum HOM05D005981 ORTHO05D007551 3.1e-33 146.4 126 57.9
BraA09t38748Z Brassica rapa HOM05D005981 ORTHO05D007551 3.1e-33 146.4 184 49.5
AL1G48940 Arabidopsis lyrata HOM05D005981 ORTHO05D007551 5.3e-33 145.6 170 51.2
BcaB07g33127 Brassica carinata HOM05D005981 ORTHO05D007551 9.9e-32 141.4 127 56.7
unitig_747.g21468 Utricularia gibba HOM05D005981 ORTHO05D007551 1.7e-31 140.6 118 60.2
Ca_14000_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 2.5e-30 136.7 115 62.6
Os01g0874800 Oryza sativa ssp. japonica HOM05D005981 ORTHO05D007551 7.9e-29 131.7 117 57.3
Zm00001eb146190 Zea mays HOM05D005981 ORTHO05D007551 1.0e-28 131.3 131 54.2
CDE06G1238 Ceratophyllum demersum HOM05D005981 ORTHO05D007551 1.3e-28 131.0 165 45.5
Peaxi162Scf00495g00015 Petunia axillaris HOM05D005981 ORTHO05D007551 3.0e-28 129.8 169 43.8
vmacro12496 Vaccinium macrocarpon HOM05D005981 ORTHO05D007551 9.0e-25 118.2 176 47.2
MD05G1040800 Malus domestica HOM05D005981 ORTHO05D007551 1.5e-24 117.5 97 61.9
HPP92_000083 Vanilla planifolia HOM05D005981 ORTHO05D007551 4.5e-24 115.9 107 52.3
Rhsim04G0161600 Rhododendron simsii HOM05D005981 ORTHO05D007551 7.6e-24 115.2 220 42.3
Rhsim06G0097100 Rhododendron simsii HOM05D005981 ORTHO05D007551 7.6e-24 115.2 220 42.3
Zm00001eb366510 Zea mays HOM05D005981 ORTHO05D007551 2.2e-23 113.6 128 47.7
Ca_13999_v3 Cicer arietinum L. HOM05D002058 ORTHO05D009216 8.4e-23 111.7 101 60.4
Ca_27969_v3 Cicer arietinum L. HOM05D005981 ORTHO05D007551 8.4e-23 111.7 101 60.4
SMO271G0041 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 7.9e-21 105.1 121 47.1
SMO308G0008 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.0e-20 104.8 121 47.1
Mapoly0035s0044 Marchantia polymorpha HOM05D005981 ORTHO05D007551 1.8e-20 104.0 170 37.6
TWI60G0628 Tripterygium wilfordii HOM05D005981 ORTHO05D007551 1.8e-20 104.0 85 62.4
SMO174G0079 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 1.1e-19 101.3 121 46.3
Oeu021010.1 Olea europaea HOM05D005981 ORTHO05D007551 3.3e-19 99.8 83 62.7
Pp3c1_23520 Physcomitrium patens HOM05D005981 ORTHO05D007551 4.8e-18 95.9 178 36.0
DCAR_023098 Daucus carota HOM05D005981 ORTHO05D007551 1.4e-17 94.4 71 69.0
Haze_17917 Corylus avellana HOM05D005981 ORTHO05D007551 1.8e-17 94.0 98 56.1
Lsat_1_v5_gn_3_113620 Lactuca sativa HOM05D005981 ORTHO05D007551 4.1e-17 92.8 109 50.5
Lsat_1_v5_gn_7_7380 Lactuca sativa HOM05D005981 ORTHO05D007551 4.1e-17 92.8 109 50.5
SMO174G0158 Selaginella moellendorffii HOM05D005981 ORTHO05D007551 4.1e-17 92.8 121 43.8
Lsat_1_v5_gn_3_113600 Lactuca sativa HOM05D005981 ORTHO05D007551 9.0e-17 91.7 94 56.4
Zm00001eb366480 Zea mays HOM05D005981 ORTHO05D007551 2.6e-16 90.1 117 44.4
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.0e-15 88.2 98 49.0
VMungo0464G0319 Vigna mungo HOM05D005981 ORTHO05D007551 7.2e-14 82.0 64 67.2
Cpa.g.sc66.54 Carica papaya HOM05D005981 ORTHO05D007551 9.4e-14 81.6 113 45.1
Ah.05g178000 Amaranthus hybridus HOM05D005981 ORTHO05D007551 2.1e-13 80.5 73 57.5
arahy.Tifrunner.gnm1.ann1.XJI1XC Arachis hypogaea HOM05D005981 ORTHO05D007551 3.6e-13 79.7 74 56.8
VMungo0464G1554 Vigna mungo HOM05D005981 ORTHO05D007551 9.7e-11 71.6 57 66.7
HPP92_000088 Vanilla planifolia HOM05D005981 ORTHO05D007551 2.4e-09 67.0 71 47.9
CBR_g56098 Chara braunii HOM05D005981 ORTHO05D007551 2.2e-07 60.5 57 49.1
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 7.2e-06 55.5 114 37.7


User provided reference genes

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