Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.8e-177 624.4 318 100.0
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.5e-125 453.4 309 77.3
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.3e-125 451.1 309 76.7
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.6e-114 416.0 260 84.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.4e-114 415.6 293 73.0
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.3e-110 403.7 271 74.9
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 4.3e-109 398.7 279 71.7
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 9.6e-109 397.5 261 75.5
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 2.2e-105 386.3 306 65.0
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.4e-104 383.6 266 71.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.7e-103 379.4 248 77.4
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.5e-103 379.0 253 72.3
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.5e-101 373.6 294 64.3
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.9e-101 373.2 308 65.3
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.3e-101 372.1 267 70.8
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 7.3e-101 371.3 282 68.1
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 7.3e-101 371.3 305 65.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 4.8e-100 368.6 254 70.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 4.8e-100 368.6 265 69.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.8e-100 368.6 329 61.1
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.1e-99 367.5 276 68.1
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 5.3e-99 365.2 253 70.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 9.0e-99 364.4 310 61.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 2.6e-98 362.8 255 71.0
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 3.4e-98 362.5 253 69.6
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-97 360.5 271 66.1
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.7e-97 360.1 271 66.8
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.2e-97 359.8 289 63.0
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 2.9e-97 359.4 255 70.6
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 8.4e-97 357.8 281 62.6
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.4e-96 357.1 294 62.6
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.9e-96 356.7 253 69.6
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 4.2e-96 355.5 263 67.3
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.2e-95 354.0 279 62.7
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.1e-95 353.2 253 67.2
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.7e-95 352.8 426 49.5
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 6.0e-95 351.7 254 69.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.0e-94 350.9 282 64.2
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.0e-94 350.9 289 63.3
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-94 350.1 272 64.3
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.0e-94 349.4 285 63.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 3.0e-94 349.4 253 67.6
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 8.7e-94 347.8 253 67.2
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 8.7e-94 347.8 253 67.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.7e-94 347.8 272 64.3
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.5e-93 346.3 263 65.8
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.6e-92 343.6 253 66.0
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 2.1e-92 343.2 250 68.4
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.1e-92 343.2 296 60.1
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.8e-92 342.8 253 66.0
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 2.4e-91 339.7 253 67.2
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.1e-91 339.3 270 64.1
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.0e-91 339.0 302 60.3
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 6.9e-91 338.2 290 60.3
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.4e-90 335.9 270 63.7
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 9.9e-90 334.3 268 63.4
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.7e-89 333.6 290 61.0
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.1e-88 330.9 281 61.2
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.9e-88 330.1 291 59.1
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 3.2e-88 329.3 294 59.2
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 4.2e-88 328.9 277 59.9
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 4.2e-88 328.9 269 63.2
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 4.2e-88 328.9 264 64.0
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 5.5e-88 328.6 281 60.9
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.6e-87 327.0 281 62.3
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.0e-86 322.8 253 64.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-85 320.5 268 60.8
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.9e-85 320.1 233 68.7
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.5e-85 319.7 339 51.0
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 5.6e-85 318.5 257 62.6
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 4.8e-84 315.5 268 60.8
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.7e-81 307.0 351 49.6
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 8.4e-81 304.7 244 63.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.5e-80 303.1 268 57.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 4.2e-80 302.4 249 63.1
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 7.1e-80 301.6 181 80.7
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 7.9e-79 298.1 263 59.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 9.7e-77 291.2 253 59.7
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.6e-76 290.4 237 62.4
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.8e-76 288.9 250 55.2
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.4e-75 286.6 244 56.1
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 4.1e-75 285.8 253 54.2
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 5.3e-75 285.4 291 50.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 5.3e-75 285.4 259 54.8
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 9.0e-75 284.6 253 54.5
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.2e-74 284.3 259 54.8
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.0e-74 283.5 288 49.7
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 2.6e-74 283.1 253 53.8
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 3.4e-74 282.7 285 50.9
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.9e-74 282.0 272 50.4
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.7e-73 280.4 288 49.7
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.7e-73 280.4 265 55.8
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.2e-73 280.0 256 54.3
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.9e-73 279.6 291 47.8
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 5.0e-73 278.9 276 50.0
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.2e-72 276.2 256 52.7
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 7.2e-72 275.0 251 54.6
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 7.2e-72 275.0 174 81.0
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 7.2e-72 275.0 255 50.2
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.2e-71 274.2 255 49.8
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.2e-71 274.2 255 49.8
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.6e-71 273.9 291 47.8
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 3.7e-68 262.7 174 78.2
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.8e-68 262.3 256 52.0
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 8.2e-68 261.5 256 52.0
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.2e-68 261.5 256 52.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-67 261.2 256 52.0
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.2e-65 253.4 256 50.4
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.9e-64 250.4 287 45.6
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.9e-62 242.7 287 50.2
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.1e-62 242.3 255 49.8
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 6.7e-62 241.9 280 44.3
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.3e-61 239.6 236 55.1
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 4.4e-61 239.2 239 54.4
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 4.8e-60 235.7 219 55.7
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.8e-59 233.8 249 49.0
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 9.1e-59 231.5 209 59.8
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.2e-56 223.0 169 69.2
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.2e-54 215.7 249 50.6
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.8e-52 209.1 183 61.2
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 9.1e-51 204.9 140 70.7
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 7.7e-50 201.8 167 61.1
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.0e-49 199.1 168 60.7
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.2e-48 195.3 247 46.6
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.0e-46 189.9 134 69.4
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-45 188.0 181 56.9
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 8.3e-44 181.8 255 42.0
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 4.1e-43 179.5 343 35.3
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 7.0e-43 178.7 439 32.8
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.7e-41 174.1 124 69.4
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.2e-39 167.9 193 48.7
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.6e-39 167.5 190 48.4
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.7e-39 166.0 275 44.0
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 8.0e-39 165.2 103 74.8
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.2e-37 161.4 175 51.4
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 6.6e-33 145.6 288 34.7
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 5.5e-32 142.5 249 34.9
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 2.0e-29 134.0 295 32.5
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.7e-29 132.5 86 80.2
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 7.5e-29 132.1 167 43.1
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.7e-26 123.6 266 30.1
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.1e-24 118.2 240 35.0
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.2e-23 114.8 111 55.9
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.2e-22 109.4 65 86.2
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 3.4e-21 106.7 145 41.4
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 4.9e-20 102.8 110 51.8
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.4e-19 99.4 61 85.2
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 9.2e-19 98.6 145 39.3
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 9.2e-19 98.6 145 39.3
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.9e-17 93.2 66 66.7
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.5e-16 91.3 196 32.7
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.4e-14 84.7 61 65.6
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.8e-14 84.3 133 34.6
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.8e-14 84.3 98 42.9
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 2.9e-12 77.0 132 34.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 7.8e-10 68.9 244 26.2
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 1.7e-09 67.8 70 52.9
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 2.3e-09 67.4 39 79.5
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 7.3e-08 62.4 87 36.8
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.8e-07 60.5 68 45.6


User provided reference genes

Program Settings