Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41118 Davidia involucrata HOM05D004566 ORTHO05D006041 3.9e-67 258.1 136 100.0
Actinidia15158 Actinidia chinensis HOM05D004566 ORTHO05D006041 8.9e-64 246.9 135 95.6
CSS0027392 Camellia sinensis var. sinensis HOM05D004566 ORTHO05D006041 2.0e-63 245.7 135 93.3
vmacro05453 Vaccinium macrocarpon HOM05D004566 ORTHO05D006041 4.4e-63 244.6 135 94.8
Hma1.2p1_0107F.1_g051470 Hydrangea macrophylla HOM05D004566 ORTHO05D006041 5.8e-63 244.2 134 94.8
Rhsim02G0231500 Rhododendron simsii HOM05D004566 ORTHO05D006041 3.8e-62 241.5 135 93.3
Thecc.08G145200 Theobroma cacao HOM05D004566 ORTHO05D006041 6.4e-62 240.7 135 90.4
Manes.18G088000 Manihot esculenta HOM05D004566 ORTHO05D006041 7.1e-61 237.3 135 91.1
PGR042G0484 Punica granatum HOM05D004566 ORTHO05D006041 7.1e-61 237.3 135 88.9
CiPaw.16G017400 Carya illinoinensis HOM05D004566 ORTHO05D006041 1.2e-60 236.5 132 93.2
Gohir.A02G108700 Gossypium hirsutum HOM05D004566 ORTHO05D006041 1.2e-60 236.5 135 89.6
GSVIVG01010038001 Vitis vinifera HOM05D004566 ORTHO05D006041 1.2e-60 236.5 135 91.1
arahy.Tifrunner.gnm1.ann1.FR9HZZ Arachis hypogaea HOM05D004566 ORTHO05D006041 1.6e-60 236.1 135 88.9
arahy.Tifrunner.gnm1.ann1.J7270J Arachis hypogaea HOM05D004566 ORTHO05D006041 1.6e-60 236.1 135 88.9
arahy.Tifrunner.gnm1.ann1.WMJ7PV Arachis hypogaea HOM05D004566 ORTHO05D006041 1.6e-60 236.1 135 88.9
Duzib041G0052 Durio zibethinus HOM05D004566 ORTHO05D006041 2.1e-60 235.7 135 88.9
Ca_16654_v3 Cicer arietinum L. HOM05D004566 ORTHO05D006041 2.7e-60 235.3 135 89.6
Potri.005G188000 Populus trichocarpa HOM05D004566 ORTHO05D006041 2.7e-60 235.3 135 91.1
CiPaw.15G021200 Carya illinoinensis HOM05D004566 ORTHO05D006041 4.6e-60 234.6 134 91.8
Potri.002G071600 Populus trichocarpa HOM05D004566 ORTHO05D006041 4.6e-60 234.6 135 89.6
arahy.Tifrunner.gnm1.ann1.9SPN5G Arachis hypogaea HOM05D004566 ORTHO05D006041 6.0e-60 234.2 135 88.1
Migut.N03233 Erythranthe guttata HOM05D004566 ORTHO05D006041 6.0e-60 234.2 134 91.0
QL02p025237 Quercus lobata HOM05D004566 ORTHO05D006041 6.0e-60 234.2 135 90.4
SGA_v2.0_scaffold19G08652 Striga asiatica HOM05D004566 ORTHO05D006041 6.0e-60 234.2 135 89.6
TWI15G0549 Tripterygium wilfordii HOM05D004566 ORTHO05D006041 6.0e-60 234.2 135 88.9
Ciclev10000721m.g Citrus clementina HOM05D004566 ORTHO05D006041 7.8e-60 233.8 135 89.6
Oeu014477.2 Olea europaea HOM05D004566 ORTHO05D006041 7.8e-60 233.8 135 90.4
QL09p046738 Quercus lobata HOM05D004566 ORTHO05D006041 7.8e-60 233.8 135 89.6
QL09p046848 Quercus lobata HOM05D004566 ORTHO05D006041 7.8e-60 233.8 135 89.6
Sabra05G0143600 Salix brachista HOM05D004566 ORTHO05D006041 7.8e-60 233.8 135 90.4
SGA_v2.0_scaffold25G11162 Striga asiatica HOM05D004566 ORTHO05D006041 7.8e-60 233.8 135 89.6
Nitab4.5_0010241g0020 Nicotiana tabacum HOM05D004566 ORTHO05D006041 1.0e-59 233.4 135 89.6
Cc03_g13150 Coffea canephora HOM05D004566 ORTHO05D006041 1.7e-59 232.6 135 88.9
Lalb_Chr11g0066451 Lupinus albus HOM05D004566 ORTHO05D006041 1.7e-59 232.6 135 89.6
Solyc04g064820.3 Solanum lycopersicum HOM05D004566 ORTHO05D006041 2.3e-59 232.3 135 88.9
Sopen04g026780 Solanum pennellii HOM05D004566 ORTHO05D006041 2.3e-59 232.3 135 88.9
Eucgr.F02736 Eucalyptus grandis HOM05D004566 ORTHO05D006041 3.0e-59 231.9 135 85.9
Gohir.D03G061100 Gossypium hirsutum HOM05D004566 ORTHO05D006041 3.0e-59 231.9 135 88.1
Gorai.013G105000 Gossypium raimondii HOM05D004566 ORTHO05D006041 3.0e-59 231.9 135 88.1
Nitab4.5_0000299g0160 Nicotiana tabacum HOM05D004566 ORTHO05D006041 3.0e-59 231.9 135 88.9
Sc02g0000500 Simmondsia chinensis HOM05D004566 ORTHO05D006041 3.0e-59 231.9 135 88.1
Atru.chr13.1721 Acer truncatum HOM05D004566 ORTHO05D006041 3.9e-59 231.5 135 88.9
RcHm_v2.0_Chr6g0277061 Rosa chinensis HOM05D004566 ORTHO05D006041 3.9e-59 231.5 135 87.4
TWI60G0810 Tripterygium wilfordii HOM05D004566 ORTHO05D006041 3.9e-59 231.5 134 88.8
Peaxi162Scf00263g00417 Petunia axillaris HOM05D004566 ORTHO05D006041 5.1e-59 231.1 135 88.1
Duzib093G0819 Durio zibethinus HOM05D004566 ORTHO05D006041 8.7e-59 230.3 151 80.8
HanXRQChr09g0275251 Helianthus annuus HOM05D004566 ORTHO05D006041 1.1e-58 229.9 135 88.1
Lsat_1_v5_gn_9_77820 Lactuca sativa HOM05D004566 ORTHO05D006041 1.1e-58 229.9 134 89.6
Manes.02G175600 Manihot esculenta HOM05D004566 ORTHO05D006041 1.1e-58 229.9 135 88.9
Psat7g096680 Pisum sativum HOM05D004566 ORTHO05D006041 1.1e-58 229.9 135 87.4
SalBow6G5540 Salvia bowleyana HOM05D004566 ORTHO05D006041 1.1e-58 229.9 134 88.1
CAN.G744.14 Capsicum annuum HOM05D004566 ORTHO05D006041 1.5e-58 229.6 135 88.1
Medtr3g090170 Medicago truncatula HOM05D004566 ORTHO05D006041 1.5e-58 229.6 135 87.4
MSTRG.24197 Avicennia marina HOM05D004566 ORTHO05D006041 1.9e-58 229.2 134 88.8
Phvul.009G135100 Phaseolus vulgaris HOM05D004566 ORTHO05D006041 1.9e-58 229.2 135 87.4
TPR.G18763 Trifolium pratense HOM05D004566 ORTHO05D006041 1.9e-58 229.2 135 86.7
Lj1g0025718 Lotus japonicus HOM05D004566 ORTHO05D006041 2.5e-58 228.8 135 86.7
DCAR_023123 Daucus carota HOM05D004566 ORTHO05D006041 3.3e-58 228.4 135 87.4
Glyma.04G240400 Glycine max HOM05D004566 ORTHO05D006041 3.3e-58 228.4 135 88.1
THA.LOC104810036 Tarenaya hassleriana HOM05D004566 ORTHO05D006041 3.3e-58 228.4 135 87.4
VMungo1309G3090 Vigna mungo HOM05D004566 ORTHO05D006041 3.3e-58 228.4 135 87.4
Cfa018360 Carpinus fangiana HOM05D004566 ORTHO05D006041 4.3e-58 228.0 135 88.9
Cpa.g.sc49.56 Carica papaya HOM05D004566 ORTHO05D006041 5.6e-58 227.6 135 85.2
Lalb_Chr23g0271371 Lupinus albus HOM05D004566 ORTHO05D006041 5.6e-58 227.6 135 88.9
Prupe.8G019800 Prunus persica HOM05D004566 ORTHO05D006041 5.6e-58 227.6 135 87.4
Glyma.06G123000 Glycine max HOM05D004566 ORTHO05D006041 7.3e-58 227.3 135 87.4
AUR62020958 Chenopodium quinoa HOM05D004566 ORTHO05D006041 9.6e-58 226.9 135 86.7
BcaB02g07097 Brassica carinata HOM05D004566 ORTHO05D006041 1.2e-57 226.5 135 85.9
Haze_17715 Corylus avellana HOM05D004566 ORTHO05D006041 1.2e-57 226.5 135 87.4
MD05G1016500 Malus domestica HOM05D004566 ORTHO05D006041 1.6e-57 226.1 135 86.7
EL10Ac5g10990 Beta vulgaris HOM05D004566 ORTHO05D006041 3.6e-57 224.9 135 83.7
AUR62018460 Chenopodium quinoa HOM05D004566 ORTHO05D006041 3.6e-57 224.9 135 86.7
AL2G37320 Arabidopsis lyrata HOM05D004566 ORTHO05D006041 4.7e-57 224.6 135 85.2
CANSAT25G2177 Cannabis sativa HOM05D004566 ORTHO05D006041 1.4e-56 223.0 135 84.4
Sp5g32320 Schrenkiella parvula HOM05D004566 ORTHO05D006041 1.8e-56 222.6 135 85.2
Aqoxy6G02084 Aquilegia oxysepala HOM05D004566 ORTHO05D006041 5.2e-56 221.1 135 85.9
TAR381G1517 Trochodendron aralioides HOM05D004566 ORTHO05D006041 5.2e-56 221.1 135 88.1
Carub.0002s2403 Capsella rubella HOM05D004566 ORTHO05D006041 6.9e-56 220.7 135 84.4
CsaV3_6G030940 Cucumis sativus L. HOM05D004566 ORTHO05D006041 6.9e-56 220.7 135 83.7
Sed0000192 Sechium edule HOM05D004566 ORTHO05D006041 6.9e-56 220.7 135 84.4
BcaB05g25023 Brassica carinata HOM05D004566 ORTHO05D006041 1.2e-55 219.9 135 83.7
Thhalv10018344m.g Eutrema salsugineum HOM05D004566 ORTHO05D006041 1.2e-55 219.9 135 83.7
unitig_52.g17536 Utricularia gibba HOM05D004566 ORTHO05D006041 1.2e-55 219.9 134 83.6
Aa31LG11G11410 Aethionema arabicum HOM05D004566 ORTHO05D006041 1.5e-55 219.5 135 83.7
A02p21150 Brassica napus HOM05D004566 ORTHO05D006041 1.5e-55 219.5 135 83.0
C02p34300 Brassica napus HOM05D004566 ORTHO05D006041 1.5e-55 219.5 135 83.0
BolC2t09452H Brassica oleracea HOM05D004566 ORTHO05D006041 1.5e-55 219.5 135 83.0
BraA02t07132Z Brassica rapa HOM05D004566 ORTHO05D006041 1.5e-55 219.5 135 83.0
CARHR070630 Cardamine hirsuta HOM05D004566 ORTHO05D006041 1.5e-55 219.5 135 83.7
ClCG08G006480 Citrullus lanatus HOM05D004566 ORTHO05D006041 1.5e-55 219.5 135 83.7
Lj4A692G26 Lonicera japonica HOM05D004566 ORTHO05D006041 1.5e-55 219.5 164 74.4
AT1G77140 Arabidopsis thaliana HOM05D004566 ORTHO05D006041 2.0e-55 219.2 135 83.0
MELO3C008406.2 Cucumis melo HOM05D004566 ORTHO05D006041 2.6e-55 218.8 135 83.7
PSO017G6839 Papaver somniferum HOM05D004566 ORTHO05D006041 4.4e-55 218.0 135 83.7
PSO170G1270 Papaver somniferum HOM05D004566 ORTHO05D006041 5.8e-55 217.6 135 83.7
Nn5g28636 Nelumbo nucifera HOM05D004566 ORTHO05D006041 9.9e-55 216.9 135 84.4
Ah.04g149960 Amaranthus hybridus HOM05D004566 ORTHO05D006041 2.2e-54 215.7 135 83.0
MBI11_g07422_MAGBIO Magnolia biondii HOM05D004566 ORTHO05D006041 3.8e-54 214.9 135 83.7
FvH4_2g14590 Fragaria vesca HOM05D004566 ORTHO05D006041 8.4e-54 213.8 136 83.1
FAN15G1625 Fragaria x ananassa HOM05D004566 ORTHO05D006041 8.4e-54 213.8 136 83.1
FAN24G3481 Fragaria x ananassa HOM05D004566 ORTHO05D006041 8.4e-54 213.8 136 83.1
CDE06G0573 Ceratophyllum demersum HOM05D004566 ORTHO05D006041 1.4e-53 213.0 135 82.2
ATR0706G031 Amborella trichopoda HOM05D004566 ORTHO05D006041 7.1e-53 210.7 135 81.5
ECA232G5048 Erigeron canadensis HOM05D004566 ORTHO05D006041 2.7e-52 208.8 122 89.3
HPP92_000105 Vanilla planifolia HOM05D004566 ORTHO05D006041 6.0e-52 207.6 135 81.5
MD10G1016000 Malus domestica HOM05D004566 ORTHO05D006041 2.3e-51 205.7 125 84.8
COL.COLO4_03835 Corchorus olitorius HOM05D004566 ORTHO05D006041 1.5e-50 203.0 135 81.5
COL.COLO4_38311 Corchorus olitorius HOM05D004566 ORTHO05D006041 4.3e-50 201.4 144 77.1
Zm00001eb172280 Zea mays HOM05D004566 ORTHO05D006041 1.8e-48 196.1 135 73.3
Os02g0437800 Oryza sativa ssp. japonica HOM05D004566 ORTHO05D006041 2.4e-48 195.7 135 71.9
FAN20G3136 Fragaria x ananassa HOM05D004566 ORTHO05D006041 9.0e-48 193.7 167 66.5
FAN27G2999 Fragaria x ananassa HOM05D004566 ORTHO05D006041 2.6e-47 192.2 168 66.1
Pp3c18_21360 Physcomitrium patens HOM05D004566 ORTHO05D006041 3.8e-46 188.3 135 72.6
Mapoly0133s0009 Marchantia polymorpha HOM05D004566 ORTHO05D006041 6.4e-46 187.6 135 71.1
SMO118G0298 Selaginella moellendorffii HOM05D004566 ORTHO05D006041 6.7e-43 177.6 135 68.1
AagrBONN_evm.TU.Sc2ySwM_344.5277 Anthoceros agrestis HOM05D004566 ORTHO05D006041 4.8e-41 171.4 135 63.0
CDE02G4342 Ceratophyllum demersum HOM05D004566 ORTHO05D006041 5.8e-39 164.5 105 81.9
C06p31120 Brassica napus HOM05D004566 ORTHO05D006041 1.6e-36 156.4 92 81.5
BcaC08g45465 Brassica carinata HOM05D004566 ORTHO05D006041 2.7e-36 155.6 94 81.9
SHI09397 Sapria himalayana HOM05D004566 ORTHO05D035158 7.4e-34 147.5 131 65.6
BraA07t30433Z Brassica rapa HOM05D004566 ORTHO05D006041 1.2e-28 130.2 72 84.7
PRCOL_00003824 Prasinoderma coloniale HOM05D004566 ORTHO05D006041 3.0e-27 125.6 134 49.3
C06p31440 Brassica napus HOM05D004566 ORTHO05D006041 4.3e-26 121.7 122 57.4
BcaC08g45467 Brassica carinata HOM05D004566 ORTHO05D006041 3.6e-20 102.1 79 67.1
CBR_g40854 Chara braunii HOM05D004566 ORTHO05D006041 4.6e-20 101.7 72 63.9
AagrBONN_evm.TU.Sc2ySwM_344.3226 Anthoceros agrestis HOM05D004566 ORTHO05D006041 1.3e-17 93.6 74 55.4
C06p31340 Brassica napus HOM05D004566 ORTHO05D006041 5.0e-14 81.6 53 86.8
Cre07.g333950 Chlamydomonas reinhardtii HOM05D004566 ORTHO05D006041 1.9e-13 79.7 139 37.4
C06p30970 Brassica napus HOM05D004566 ORTHO05D006041 1.3e-09 67.0 65 56.9
BolC6t38256H Brassica oleracea HOM05D004566 ORTHO05D006041 7.0e-08 61.2 104 40.4
EL10Ac9g21259 Beta vulgaris HOM05D003695 ORTHO05D004788 4.5e-07 58.5 118 32.2
CAN.G630.74 Capsicum annuum HOM05D001793 ORTHO05D001938 1.3e-06 57.0 119 32.8
Solyc08g079520.3 Solanum lycopersicum HOM05D001793 ORTHO05D001938 1.3e-06 57.0 119 32.8
Sopen08g027890 Solanum pennellii HOM05D001793 ORTHO05D001938 1.3e-06 57.0 119 32.8
AUR62012932 Chenopodium quinoa HOM05D003695 ORTHO05D004788 1.7e-06 56.6 118 32.2
Aa31LG11G5190 Aethionema arabicum HOM05D001793 ORTHO05D001938 3.8e-06 55.5 119 29.4
Cpa.g.sc29.83 Carica papaya HOM05D001793 ORTHO05D001938 5.0e-06 55.1 119 31.1
Aa31LG1G2280 Aethionema arabicum HOM05D001793 ORTHO05D001938 6.5e-06 54.7 119 31.9
THA.LOC104806350 Tarenaya hassleriana HOM05D001793 ORTHO05D001938 6.5e-06 54.7 135 28.1
Carub.0006s3130 Capsella rubella HOM05D001793 ORTHO05D001938 8.5e-06 54.3 119 28.6
AUR62027130 Chenopodium quinoa HOM05D003695 ORTHO05D004788 8.5e-06 54.3 118 31.4
HanXRQChr07g0188651 Helianthus annuus HOM05D001793 ORTHO05D001938 8.5e-06 54.3 119 31.1


User provided reference genes

Program Settings