Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 7.6e-55 216.9 105 100.0
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 5.5e-37 157.5 105 69.5
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.0e-35 153.3 105 65.7
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.0e-35 151.8 105 66.7
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.0e-35 151.8 105 66.7
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 5.1e-35 151.0 105 63.8
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 5.1e-35 151.0 105 64.8
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.1e-34 149.8 105 65.7
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.5e-34 149.4 105 66.7
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 7.4e-34 147.1 105 65.7
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 7.4e-34 147.1 105 65.7
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 7.4e-34 147.1 105 65.7
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.8e-33 145.2 107 67.3
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 2.8e-33 145.2 105 66.7
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 4.8e-33 144.4 105 63.8
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 1.1e-32 143.3 105 63.8
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.1e-32 143.3 105 61.0
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 2.4e-32 142.1 105 63.8
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 1.3e-30 136.3 105 54.3
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 3.2e-29 131.7 105 57.1
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 2.0e-26 122.5 105 53.3
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 1.3e-25 119.8 103 58.3
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 6.3e-25 117.5 105 51.4
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 7.0e-24 114.0 105 53.3
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 1.2e-23 113.2 107 57.9
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 2.0e-23 112.5 103 51.5
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 2.7e-23 112.1 105 48.6
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.5e-23 111.7 105 48.6
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 3.5e-23 111.7 101 52.5
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 5.9e-23 110.9 103 56.3
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 7.7e-23 110.5 103 53.4
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 7.7e-23 110.5 103 51.5
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-22 109.8 102 52.0
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-22 109.8 102 52.0
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.7e-22 109.4 102 52.0
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.7e-22 109.4 103 53.4
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 2.2e-22 109.0 102 53.9
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 5.0e-22 107.8 103 53.4
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 6.5e-22 107.5 103 51.5
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.5e-22 107.1 102 51.0
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.1e-21 106.7 103 53.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.9e-21 105.9 103 51.5
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 2.5e-21 105.5 107 52.3
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 2.5e-21 105.5 107 52.3
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 2.5e-21 105.5 107 52.3
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 2.5e-21 105.5 107 52.3
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 2.5e-21 105.5 107 52.3
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 2.5e-21 105.5 107 52.3
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.5e-21 105.5 104 52.9
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 3.2e-21 105.1 103 52.4
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 3.2e-21 105.1 103 52.4
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 3.2e-21 105.1 103 52.4
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 3.2e-21 105.1 103 46.6
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 4.2e-21 104.8 103 51.5
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 5.5e-21 104.4 107 51.4
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 7.2e-21 104.0 107 51.4
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 9.4e-21 103.6 107 51.4
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 9.4e-21 103.6 107 51.4
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 9.4e-21 103.6 102 52.0
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.2e-20 103.2 107 51.4
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.2e-20 103.2 96 52.1
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.2e-20 103.2 103 51.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 1.2e-20 103.2 103 53.4
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.2e-20 103.2 102 51.0
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.2e-20 103.2 103 48.5
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 1.6e-20 102.8 98 53.1
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.6e-20 102.8 98 53.1
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.1e-20 102.4 93 50.5
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.7e-20 102.1 102 51.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.7e-20 102.1 102 51.0
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 2.7e-20 102.1 103 49.5
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.6e-20 101.7 103 50.5
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 3.6e-20 101.7 110 47.3
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 4.7e-20 101.3 110 48.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 4.7e-20 101.3 103 50.5
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 6.1e-20 100.9 102 51.0
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 6.1e-20 100.9 111 49.5
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 8.0e-20 100.5 102 50.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 8.0e-20 100.5 103 47.6
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 8.0e-20 100.5 103 47.6
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.0e-19 100.1 98 54.1
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.0e-19 100.1 107 50.5
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.4e-19 99.8 103 49.5
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.3e-19 99.0 102 50.0
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 2.3e-19 99.0 103 49.5
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.0e-19 98.6 103 47.6
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 3.0e-19 98.6 103 49.5
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 5.2e-19 97.8 106 47.2
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 8.8e-19 97.1 110 47.3
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 8.8e-19 97.1 110 47.3
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.6e-18 95.5 106 46.2
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.7e-17 92.8 111 46.8
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 2.2e-17 92.4 97 50.5
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 2.8e-17 92.0 115 43.5
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 2.8e-17 92.0 111 45.0
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 3.7e-17 91.7 68 58.8
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.1e-16 90.1 115 44.3
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.8e-16 89.4 111 43.2
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.6e-15 86.3 100 40.0
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 7.7e-15 84.0 110 40.0
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.7e-14 82.8 101 41.6
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 5.0e-14 81.3 106 39.6
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 1.5e-13 79.7 92 44.6
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.2e-12 76.6 111 37.8
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.6e-12 76.3 89 46.1
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.0e-11 73.6 100 35.0
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.8e-11 72.8 83 45.8
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 6.8e-11 70.9 100 35.0
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 6.8e-11 70.9 82 39.0
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.2e-10 70.1 144 31.2
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.0e-10 69.3 82 42.7
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 7.5e-10 67.4 71 45.1
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.8e-09 65.5 79 45.6
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 2.8e-09 65.5 101 37.6
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 3.7e-09 65.1 105 35.2
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.9e-09 64.7 51 54.9
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 6.3e-09 64.3 91 40.7
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.0e-07 59.3 105 34.3
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.7e-07 58.9 45 60.0
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 3.5e-07 58.5 65 43.1
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 5.9e-07 57.8 45 60.0
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 1.3e-06 56.6 42 54.8
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 1.3e-06 56.6 83 37.3
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 2.3e-06 55.8 83 36.1
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 2.9e-06 55.5 80 36.2
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 8.6e-06 53.9 35 68.6


User provided reference genes

Program Settings