Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.1e-217 759.6 378 100.0
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 3.5e-150 535.4 407 72.7
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.1e-132 477.2 416 62.7
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 2.5e-132 476.1 416 62.7
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 1.8e-130 469.9 377 69.8
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 5.4e-127 458.4 377 63.9
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 7.8e-126 454.5 389 61.7
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 1.0e-125 454.1 369 66.1
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 6.6e-125 451.4 386 62.2
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 1.9e-124 449.9 377 63.7
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 1.6e-123 446.8 378 61.9
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 3.6e-123 445.7 386 61.9
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 3.6e-123 445.7 376 62.8
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 5.3e-122 441.8 390 61.0
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 6.9e-122 441.4 370 63.0
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 3.4e-121 439.1 384 62.0
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 5.8e-121 438.3 390 60.8
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 3.8e-120 435.6 377 60.5
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.4e-119 433.0 377 61.5
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.2e-119 432.6 377 59.9
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 5.4e-119 431.8 393 59.8
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 7.1e-119 431.4 385 60.5
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 1.2e-118 430.6 377 60.7
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 4.6e-118 428.7 377 59.9
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 1.0e-117 427.6 376 60.6
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 8.7e-117 424.5 372 59.1
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 1.9e-116 423.3 377 59.4
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 4.3e-116 422.2 384 59.9
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 1.3e-115 420.6 385 59.2
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 1.6e-115 420.2 378 57.4
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 1.1e-114 417.5 408 55.4
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.4e-114 417.2 376 58.5
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 1.8e-114 416.8 375 59.7
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 5.3e-114 415.2 408 55.9
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.9e-114 414.8 408 55.9
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 9.0e-114 414.5 408 55.9
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 2.0e-113 413.3 368 60.3
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 2.0e-113 413.3 408 56.1
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.4e-113 412.5 384 59.1
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 4.5e-113 412.1 373 59.2
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 7.6e-113 411.4 371 56.6
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 9.9e-113 411.0 408 55.4
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 1.3e-112 410.6 376 57.4
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.8e-112 409.1 382 58.6
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 3.8e-112 409.1 408 55.9
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 6.4e-112 408.3 391 55.2
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 4.2e-111 405.6 388 57.0
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 9.3e-111 404.4 371 57.4
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.2e-110 404.1 408 55.4
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 4.6e-110 402.1 371 58.0
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 6.0e-110 401.7 386 53.6
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 1.0e-109 401.0 393 53.2
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 2.3e-109 399.8 472 49.6
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 3.9e-109 399.1 370 58.1
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 6.7e-109 398.3 369 58.5
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 6.7e-109 398.3 371 56.1
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 8.7e-109 397.9 390 56.4
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.5e-108 397.1 371 56.1
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 1.9e-108 396.7 408 54.7
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.9e-108 396.7 370 58.4
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 4.3e-108 395.6 387 56.6
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 1.3e-107 394.0 369 58.0
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 1.6e-107 393.7 404 55.2
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.6e-107 393.7 374 55.1
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 2.1e-107 393.3 391 55.8
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 2.8e-107 392.9 363 58.7
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 2.8e-107 392.9 377 54.9
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 3.7e-107 392.5 392 55.9
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.4e-106 390.6 369 57.5
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 6.9e-106 388.3 364 58.5
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 1.5e-105 387.1 364 58.5
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 2.0e-105 386.7 369 56.4
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 2.0e-105 386.7 375 56.8
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.3e-104 384.0 366 58.5
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 3.0e-101 372.9 397 54.4
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.8e-99 365.5 425 50.4
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 8.2e-99 364.8 416 51.0
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 3.4e-97 359.4 367 53.4
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 3.4e-97 359.4 345 57.1
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 2.3e-93 346.7 380 48.2
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.4e-90 336.7 366 52.2
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 7.7e-89 331.6 367 48.8
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.5e-87 326.6 379 52.2
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 7.2e-87 325.1 377 47.2
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.4e-85 320.9 303 56.8
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 4.7e-78 295.8 301 52.5
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.0e-77 294.7 294 56.1
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.8e-77 293.9 294 54.4
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 3.3e-76 289.7 393 43.3
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 4.4e-76 289.3 297 54.2
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 4.8e-75 285.8 297 52.2
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.7e-72 277.3 369 39.6
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 5.0e-72 275.8 360 42.5
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 8.5e-72 275.0 284 55.3
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 2.8e-67 260.0 348 44.8
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 3.5e-65 253.1 384 40.6
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 1.9e-63 247.3 191 66.0
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 6.1e-62 242.3 194 64.9
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 8.8e-61 238.4 193 61.1
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.6e-60 236.9 195 63.1
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 5.9e-57 225.7 170 64.7
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.0e-56 224.9 170 67.1
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 5.2e-53 212.6 164 65.9
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 8.8e-53 211.8 164 64.6
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 6.3e-51 205.7 245 47.3
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 4.1e-50 203.0 224 51.3
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.6e-49 201.1 156 64.1
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 5.9e-49 199.1 309 44.0
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 2.9e-48 196.8 158 63.3
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.1e-47 194.9 335 39.7
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 1.2e-46 191.4 115 82.6
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 3.9e-40 169.9 171 51.5
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 8.1e-30 135.6 80 77.5
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 9.9e-28 128.6 78 83.3
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 2.7e-25 120.6 90 68.9
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 1.0e-24 118.6 82 68.3
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 1.1e-23 115.2 62 87.1
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 6.8e-21 105.9 83 63.9
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 7.6e-20 102.4 75 66.7
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 8.7e-16 89.0 120 44.2
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.6e-12 77.4 47 78.7
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 2.6e-12 77.4 371 25.9
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 2.4e-10 70.9 366 24.3
Dinv39766 Davidia involucrata HOM05D005800 ORTHO05D184923 5.1e-08 63.2 32 96.9
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 6.6e-08 62.8 34 88.2
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 3.3e-07 60.5 178 26.4


User provided reference genes

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