Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.3e-156 556.2 264 100.0
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 2.7e-125 452.2 264 81.4
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 7.9e-117 424.1 264 74.2
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 5.1e-116 421.4 264 73.9
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 6.3e-106 387.9 262 69.8
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 3.3e-99 365.5 264 65.9
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 3.7e-98 362.1 264 67.0
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 2.7e-96 355.9 254 68.5
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 1.3e-95 353.6 264 64.0
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 5.0e-95 351.7 264 64.4
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 3.0e-92 342.4 264 62.9
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 2.8e-90 335.9 267 61.4
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.7e-90 335.5 266 62.0
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 7.0e-89 331.3 266 62.4
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 9.1e-89 330.9 266 60.9
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.6e-88 330.1 262 60.7
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 4.5e-88 328.6 266 60.9
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.0e-87 327.4 266 60.5
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 1.3e-87 327.0 266 60.2
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.3e-87 327.0 266 60.2
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 1.7e-87 326.6 258 63.2
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.8e-87 325.5 266 57.5
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 6.5e-87 324.7 253 61.3
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.5e-86 323.6 268 57.1
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.5e-86 323.6 254 61.8
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 1.9e-86 323.2 189 81.0
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.5e-86 322.8 266 60.2
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 7.2e-86 321.2 268 58.6
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 7.2e-86 321.2 251 62.5
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 9.4e-86 320.9 261 58.6
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.2e-85 320.5 233 64.8
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 1.6e-85 320.1 268 56.7
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 2.1e-85 319.7 253 61.3
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.7e-85 318.5 268 59.0
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 6.1e-85 318.2 200 73.0
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.0e-84 317.4 254 59.1
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 3.0e-84 315.8 268 60.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 3.0e-84 315.8 268 61.6
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.0e-84 315.8 268 59.7
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 5.2e-84 315.1 265 55.8
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 5.7e-83 311.6 268 57.5
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 7.5e-83 311.2 268 60.8
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.3e-82 310.5 264 58.7
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 2.8e-82 309.3 253 58.5
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.9e-82 308.5 273 57.5
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 8.3e-82 307.8 269 59.9
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 7.0e-81 304.7 267 59.9
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.2e-81 304.3 267 59.9
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 1.3e-79 300.4 263 55.5
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 1.3e-79 300.4 267 55.1
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 2.3e-79 299.7 252 59.5
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 3.3e-78 295.8 268 59.0
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 2.1e-77 293.1 266 55.6
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 3.6e-77 292.4 226 61.1
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.0e-77 291.2 250 57.6
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.4e-76 290.4 264 55.7
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.8e-76 290.0 270 54.8
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 5.2e-76 288.5 266 55.6
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 5.2e-76 288.5 267 55.4
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 5.2e-76 288.5 265 54.0
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 3.4e-75 285.8 259 55.6
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 7.5e-75 284.6 251 57.4
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 9.8e-75 284.3 269 55.4
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.3e-74 283.9 268 55.2
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 3.7e-74 282.3 220 62.7
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 8.3e-74 281.2 271 52.4
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.1e-73 280.8 255 54.5
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.2e-73 279.3 247 56.3
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 4.1e-73 278.9 253 53.8
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 5.4e-73 278.5 238 52.5
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 9.2e-73 277.7 245 55.1
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.2e-72 277.3 267 53.9
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 1.6e-72 276.9 266 54.5
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 1.6e-72 276.9 268 54.5
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.6e-72 276.9 245 55.9
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 2.7e-72 276.2 252 57.1
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 2.7e-72 276.2 245 54.7
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.7e-71 273.5 264 51.9
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.9e-70 270.0 211 61.6
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.5e-70 269.6 256 54.3
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 6.2e-69 265.0 274 54.4
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 8.0e-69 264.6 243 52.3
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 4.0e-68 262.3 273 54.2
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 1.5e-67 260.4 251 53.0
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 7.5e-67 258.1 228 56.1
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 7.5e-67 258.1 264 49.2
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 7.5e-67 258.1 266 47.7
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 1.7e-66 256.9 258 51.6
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.7e-66 256.9 231 53.2
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 2.9e-66 256.1 267 49.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.9e-65 253.4 265 46.4
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.4e-65 253.1 266 47.7
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.4e-65 253.1 266 47.7
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.4e-65 253.1 214 57.0
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 3.2e-65 252.7 264 48.1
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 4.1e-65 252.3 267 46.4
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 7.0e-65 251.5 246 53.7
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.2e-64 250.8 265 47.5
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.6e-64 250.4 242 51.7
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-64 250.4 267 48.3
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 2.0e-64 250.0 202 58.9
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 6.0e-64 248.4 266 50.4
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 7.8e-64 248.1 264 46.6
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 7.8e-64 248.1 264 46.6
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 7.8e-64 248.1 264 46.6
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.7e-63 246.9 266 46.6
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.7e-63 246.9 266 46.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.0e-63 245.4 240 54.6
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 6.6e-63 245.0 286 45.5
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 8.6e-63 244.6 263 45.6
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 8.6e-63 244.6 265 45.7
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.1e-62 244.2 239 50.2
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 3.3e-62 242.7 261 51.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.3e-62 242.3 240 54.2
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 7.3e-62 241.5 222 52.3
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.5e-62 241.1 266 45.5
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 1.2e-61 240.7 258 48.1
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.2e-61 240.7 297 44.8
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 1.6e-61 240.4 312 44.6
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 4.7e-61 238.8 252 47.6
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 4.7e-61 238.8 229 50.7
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.1e-60 237.7 268 50.4
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.3e-60 236.5 160 67.5
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 2.3e-60 236.5 310 44.5
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 4.0e-60 235.7 237 49.4
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 4.0e-60 235.7 251 49.8
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.5e-59 233.8 291 45.0
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 2.0e-59 233.4 214 52.3
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 4.4e-59 232.3 211 49.3
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 3.7e-58 229.2 212 51.4
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.4e-57 226.5 223 52.9
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 9.2e-57 224.6 232 51.3
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 7.8e-56 221.5 220 46.8
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.3e-55 220.7 179 58.1
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.7e-55 220.3 287 42.2
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 2.3e-55 219.9 179 58.7
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 5.1e-55 218.8 212 49.5
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 5.1e-55 218.8 266 42.9
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.3e-54 216.1 269 42.4
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 1.2e-53 214.2 179 58.7
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.6e-53 212.6 213 46.9
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.8e-52 210.3 171 58.5
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 8.9e-52 208.0 264 43.2
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.2e-51 207.6 273 42.1
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.6e-48 197.2 180 57.2
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 6.0e-48 195.3 283 41.0
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.1e-46 191.0 153 62.7
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.2e-45 187.6 235 43.8
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.2e-45 187.6 265 43.4
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 7.6e-43 178.3 245 41.6
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 7.6e-43 178.3 180 50.6
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 1.9e-41 173.7 168 48.2
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 4.2e-41 172.6 248 40.3
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 2.1e-40 170.2 223 44.8
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.0e-39 166.4 125 62.4
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 5.6e-38 162.2 219 42.9
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 4.8e-37 159.1 222 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 8.1e-37 158.3 302 30.8
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.0e-35 153.7 130 56.2
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 2.0e-35 153.7 318 28.9
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 4.9e-34 149.1 240 37.5
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 4.3e-30 136.0 230 33.5
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 5.6e-30 135.6 241 36.5
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.1e-28 131.3 85 69.4
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 2.4e-28 130.2 165 44.2
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.4e-27 126.3 195 41.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 4.9e-26 122.5 81 70.4
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.9e-25 120.6 263 32.3
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 7.1e-25 118.6 265 32.5
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 2.7e-24 116.7 138 47.8
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 6.0e-24 115.5 264 31.1
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 6.2e-21 105.5 74 60.8
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 1.4e-20 104.4 87 59.8
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 3.8e-18 96.3 130 46.2
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.4e-17 94.4 145 39.3
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 3.2e-17 93.2 110 44.5
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 3.9e-15 86.3 46 82.6
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 8.7e-15 85.1 111 41.4
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-14 82.8 136 33.1
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 6.3e-13 79.0 133 36.8
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 9.0e-12 75.1 74 52.7
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.2e-10 70.5 43 72.1
CsaV3_3G040730 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.9e-10 70.1 66 56.1
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 8.5e-10 68.6 63 54.0
Actinidia09310 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.1e-09 68.2 44 68.2
GSVIVG01033244001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.3e-07 61.2 61 52.5


User provided reference genes

Program Settings