Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 0.0e+00 1546.9 793 100.0
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 0.0e+00 1238.0 819 78.5
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 0.0e+00 1216.4 821 77.3
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 0.0e+00 1191.8 835 75.2
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 0.0e+00 1188.7 823 75.7
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 0.0e+00 1179.9 820 73.9
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 0.0e+00 1169.5 781 75.3
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 0.0e+00 1140.6 818 72.0
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 0.0e+00 1127.9 814 71.0
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 0.0e+00 1125.9 791 73.7
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 0.0e+00 1116.3 820 70.1
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 0.0e+00 1115.9 808 71.0
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 0.0e+00 1112.4 803 70.4
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 0.0e+00 1110.5 808 70.7
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 0.0e+00 1099.3 814 70.1
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 0.0e+00 1097.0 808 70.5
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 0.0e+00 1095.9 807 69.3
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 0.0e+00 1093.2 795 69.9
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 0.0e+00 1090.1 852 69.4
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 0.0e+00 1087.0 816 68.8
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 0.0e+00 1079.3 821 67.8
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.4e-310 1067.4 814 68.3
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 5.4e-310 1067.4 795 68.8
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 9.1e-310 1066.6 810 67.4
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.0e-308 1063.1 814 68.2
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.3e-308 1062.0 820 68.2
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.9e-308 1061.6 810 67.8
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 3.8e-308 1061.2 807 66.5
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.2e-306 1056.2 820 67.1
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 8.0e-306 1053.5 817 68.8
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.4e-305 1052.7 820 68.0
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.3e-305 1052.0 820 68.2
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 5.2e-305 1050.8 818 65.5
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 8.9e-305 1050.0 799 68.5
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 2.6e-304 1048.5 806 67.2
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.4e-304 1048.1 817 68.7
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 9.8e-304 1046.6 818 67.6
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.3e-303 1043.5 820 67.7
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.1e-302 1043.1 820 66.8
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.1e-302 1043.1 869 64.6
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 2.7e-301 1038.5 822 65.7
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 4.5e-301 1037.7 820 67.9
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 7.8e-301 1036.9 820 67.1
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.3e-300 1035.4 820 67.1
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 6.6e-300 1033.9 798 65.8
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 1.2e-298 1029.6 818 64.4
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.8e-297 1025.8 818 63.9
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.8e-297 1025.8 820 66.3
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 8.9e-297 1023.5 814 64.1
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.7e-295 1019.2 811 66.0
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 2.7e-293 1011.9 812 65.4
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 7.8e-293 1010.4 813 65.6
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.7e-292 1009.2 815 66.3
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 1.6e-290 1002.7 812 64.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 2.1e-290 1002.3 820 63.8
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.5e-288 996.1 807 66.3
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.0e-288 995.7 823 63.3
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 2.9e-287 991.9 823 63.5
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 6.4e-287 990.7 827 64.2
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 1.4e-286 989.6 815 64.3
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.3e-284 983.0 631 84.8
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 4.3e-283 978.0 784 65.8
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 9.5e-283 976.9 813 64.6
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 3.1e-281 971.8 794 63.1
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 8.9e-281 970.3 784 66.6
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.5e-280 969.5 725 69.7
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 3.4e-280 968.4 818 62.3
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 4.4e-280 968.0 825 62.8
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 1.7e-279 966.1 802 64.7
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.9e-279 965.3 815 63.6
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 5.4e-278 961.1 821 60.8
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 4.6e-277 958.0 798 63.8
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 7.8e-277 957.2 789 65.0
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 7.8e-277 957.2 788 62.2
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 5.1e-276 954.5 819 62.6
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 5.1e-276 954.5 803 62.8
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 9.5e-275 950.3 800 64.8
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 1.0e-268 930.2 803 60.4
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.5e-267 925.6 791 62.7
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 5.3e-265 917.9 817 61.2
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.5e-264 916.4 809 61.7
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 4.4e-264 914.8 817 61.2
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 5.8e-264 914.4 808 61.1
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 6.4e-263 911.0 812 62.1
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 8.4e-263 910.6 816 60.3
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.4e-262 909.1 817 60.5
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 4.6e-261 904.8 803 61.1
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.9e-259 899.4 824 61.4
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.9e-259 899.4 820 61.1
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.9e-259 899.4 824 61.4
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.9e-259 899.4 824 61.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 1.6e-258 896.3 820 61.0
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 1.5e-256 889.8 811 58.1
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.1e-241 839.0 795 57.2
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 1.8e-236 823.2 798 56.4
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.1e-225 785.4 652 62.9
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.0e-224 783.1 652 62.7
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 9.4e-222 774.2 792 56.4
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 3.6e-205 719.2 641 61.2
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.3e-194 684.1 569 62.9
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.9e-191 672.9 457 74.8
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 5.4e-177 625.5 844 45.6
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.6e-176 624.0 461 72.2
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 2.3e-175 620.2 477 68.6
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.6e-168 597.4 485 66.6
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 1.9e-166 590.5 480 65.8
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.5e-166 590.1 465 66.0
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 2.8e-165 586.6 498 61.8
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 4.4e-163 579.3 498 62.0
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 2.9e-162 576.6 508 60.2
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.3e-159 567.0 485 64.9
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 8.6e-159 565.1 457 63.9
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 8.6e-159 565.1 457 63.9
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.1e-156 558.1 734 45.9
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 4.4e-155 552.7 510 57.8
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 9.3e-153 545.0 690 46.1
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.2e-152 544.7 459 63.4
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 4.3e-150 536.2 467 62.7
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.6e-149 534.3 454 61.2
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.1e-149 533.9 410 66.6
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 4.8e-149 532.7 484 59.3
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.8e-148 530.8 470 59.8
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 6.9e-148 528.9 470 59.8
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 9.9e-147 525.0 459 60.3
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 3.9e-143 513.1 680 47.4
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 9.6e-142 508.4 460 59.3
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 2.4e-137 493.8 458 57.9
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 9.3e-137 491.9 461 57.0
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 7.9e-136 488.8 469 57.8
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 5.3e-132 476.1 737 41.0
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.2e-131 474.9 464 55.6
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 7.6e-131 472.2 466 55.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.7e-130 471.1 466 55.6
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 6.5e-130 469.2 455 57.4
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 6.2e-125 452.6 752 38.2
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.8e-123 446.0 299 76.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.5e-120 436.8 457 53.2
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.3e-110 403.3 633 43.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.8e-103 381.3 312 64.1
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 6.1e-96 356.3 274 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 6.3e-93 346.3 465 43.7
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.6e-86 324.3 222 77.5
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 8.8e-79 299.3 196 80.6
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.3e-66 258.8 147 81.0
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 4.0e-63 247.3 358 39.7
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 9.8e-62 242.7 729 30.5
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.3e-57 227.3 173 70.5
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.3e-57 227.3 173 70.5
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 5.2e-55 220.3 147 70.1
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.2e-54 219.2 356 41.3
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.3e-53 215.7 140 73.6
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 7.3e-49 199.9 450 31.1
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.3e-41 174.1 150 60.0
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.6e-40 171.0 150 58.7
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.7e-29 135.6 90 67.8
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 8.7e-26 123.2 96 61.5
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 8.4e-21 106.7 70 70.0
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.1e-20 106.3 90 67.8
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.9e-13 81.6 54 68.5
MD08G1099400 Malus domestica HOM05D031194 ORTHO05D029699 2.5e-09 68.6 55 56.4


User provided reference genes

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