Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.1e-255 885.2 449 100.0
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.4e-206 723.0 386 94.0
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 2.1e-202 709.1 449 81.3
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.5e-200 703.0 451 81.2
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.9e-196 688.7 449 79.5
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 2.0e-192 676.0 431 80.3
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.4e-190 669.8 452 76.1
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.8e-190 669.5 451 78.9
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.1e-190 668.3 457 76.4
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 2.0e-189 666.0 452 76.3
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.7e-189 665.6 490 72.9
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 1.3e-188 663.3 450 77.1
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 1.2e-186 656.8 448 75.0
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 8.9e-185 650.6 449 76.2
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 4.4e-184 648.3 449 74.8
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 5.7e-184 647.9 466 72.1
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 7.5e-184 647.5 449 75.3
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 1.4e-182 643.3 449 74.4
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 1.7e-180 636.3 449 72.4
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.3e-180 636.0 450 75.3
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.1e-179 633.6 450 75.3
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 2.5e-179 632.5 450 75.1
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.8e-178 629.0 455 71.4
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.4e-177 626.7 449 73.9
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.3e-177 625.9 453 73.3
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 3.0e-177 625.5 506 67.8
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 6.8e-177 624.4 467 70.4
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 8.9e-177 624.0 469 71.6
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.6e-176 622.5 481 70.1
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.6e-176 622.5 462 70.8
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 7.5e-176 620.9 449 72.6
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 7.5e-176 620.9 449 72.6
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.3e-175 620.2 450 72.2
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 2.2e-175 619.4 454 70.7
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 2.2e-175 619.4 454 70.7
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 4.9e-175 618.2 453 70.9
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 8.3e-175 617.5 450 71.8
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.4e-174 616.7 449 72.8
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.4e-174 616.7 450 71.6
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 2.4e-174 615.9 449 72.4
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 9.2e-174 614.0 449 70.8
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.0e-173 612.8 484 68.6
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.7e-173 612.5 449 71.7
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.3e-172 610.1 449 71.7
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.3e-172 610.1 454 71.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.0e-172 608.2 440 71.1
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 8.6e-172 607.4 449 70.8
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.1e-171 607.1 455 70.8
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 2.5e-171 605.9 465 69.5
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 3.3e-171 605.5 449 71.0
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 3.3e-171 605.5 459 71.2
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 5.6e-171 604.7 450 70.4
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.1e-170 602.8 450 70.0
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 2.8e-170 602.4 450 70.2
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 1.1e-169 600.5 452 71.0
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 5.2e-169 598.2 462 68.4
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 6.8e-169 597.8 451 69.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 8.9e-169 597.4 450 70.0
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 8.9e-169 597.4 450 69.8
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.0e-168 596.3 449 69.9
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 3.4e-168 595.5 449 68.8
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 7.5e-168 594.3 453 69.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 1.3e-167 593.6 449 67.9
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 4.9e-167 591.7 462 68.8
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 6.4e-167 591.3 450 69.8
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 6.4e-167 591.3 449 67.9
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 6.4e-167 591.3 456 70.0
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.4e-167 591.3 484 66.9
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 8.3e-167 590.9 456 70.0
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.1e-166 590.5 453 70.2
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 3.2e-166 589.0 449 69.9
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 5.4e-166 588.2 449 69.9
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 5.4e-166 588.2 448 70.3
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.7e-165 585.9 450 70.0
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 4.6e-165 585.1 450 69.1
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 5.6e-163 578.2 450 68.2
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 5.6e-163 578.2 453 67.5
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 9.5e-163 577.4 448 68.3
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 9.5e-163 577.4 448 68.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.6e-162 576.6 493 63.3
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.1e-162 576.2 451 68.3
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 4.7e-162 575.1 450 68.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 8.1e-162 574.3 450 68.4
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 2.3e-161 572.8 450 67.1
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.3e-161 572.8 448 68.3
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.1e-161 572.4 445 67.9
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.9e-161 570.9 434 67.5
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 8.9e-161 570.9 462 66.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.8e-160 568.2 440 68.2
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 9.9e-160 567.4 449 67.0
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 6.4e-159 564.7 436 69.0
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 8.3e-159 564.3 507 61.1
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.4e-158 562.8 449 67.9
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 4.1e-158 562.0 404 73.5
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 2.7e-157 559.3 450 66.7
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 2.7e-157 559.3 450 66.4
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 3.5e-157 558.9 452 66.4
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.5e-157 558.9 450 66.2
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 8.6e-156 554.3 323 84.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.5e-155 553.5 449 65.7
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.2e-154 550.4 442 66.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 2.8e-154 549.3 355 76.6
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 2.8e-154 549.3 385 73.5
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 5.2e-153 545.0 379 73.6
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 6.8e-153 544.7 451 65.6
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.0e-152 543.1 460 64.3
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 3.4e-152 542.3 455 65.9
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 1.6e-149 533.5 456 64.3
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 1.6e-149 533.5 462 63.4
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.7e-148 530.0 425 66.1
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 3.9e-148 528.9 457 64.1
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 5.1e-148 528.5 451 64.3
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.1e-147 527.3 450 63.8
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 3.3e-147 525.8 307 83.7
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.3e-147 525.8 474 61.6
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 8.1e-146 521.2 426 65.7
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.1e-145 519.2 459 62.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.5e-144 516.9 434 64.1
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 1.4e-142 510.4 467 61.5
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 5.4e-142 508.4 448 63.8
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 3.6e-138 495.7 487 57.7
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.8e-137 493.4 450 61.3
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 4.0e-137 492.3 397 66.2
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 8.4e-135 484.6 442 57.0
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 4.6e-133 478.8 478 56.3
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 6.0e-133 478.4 262 88.9
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.0e-132 476.1 256 89.5
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-126 457.6 449 58.6
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 4.6e-125 452.2 309 71.2
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 7.4e-123 444.9 443 53.7
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.7e-122 442.6 450 55.1
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.2e-119 433.3 405 60.0
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.8e-119 432.6 442 57.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 4.9e-119 432.2 307 68.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 4.9e-119 432.2 399 60.2
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 4.9e-119 432.2 312 70.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.4e-119 431.4 541 50.6
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 8.5e-111 404.8 253 73.9
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.4e-110 404.1 452 53.1
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-109 401.0 345 62.3
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.2e-106 390.2 393 56.0
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.4e-102 374.8 289 67.8
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 2.2e-90 337.0 314 55.7
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.4e-89 334.3 332 51.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 6.3e-74 282.3 449 41.9
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 4.1e-73 279.6 259 56.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.9e-63 246.5 400 42.8
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.6e-46 189.5 353 36.3
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 6.2e-45 186.0 251 47.4
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.1e-40 171.0 187 53.5
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.5e-38 164.9 120 70.8
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 9.6e-30 135.6 81 79.0
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.8e-29 134.0 129 59.7
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.4e-28 131.7 200 45.5
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.7e-24 117.5 199 42.2
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.3e-23 115.2 214 42.5
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 2.1e-21 107.8 107 58.9
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 8.1e-21 105.9 103 59.2
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 1.7e-10 71.6 190 34.7
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 3.2e-09 67.4 281 24.9
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 3.2e-09 67.4 289 26.3
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 5.5e-09 66.6 372 23.1
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.0e-07 62.4 277 24.9
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.3e-07 61.2 289 25.6
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.3e-07 61.2 289 25.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 2.3e-07 61.2 289 25.6
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 2.3e-07 61.2 282 24.5
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 6.7e-07 59.7 227 23.8
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 2.5e-06 57.8 239 23.8
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 3.3e-06 57.4 224 22.8
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 5.7e-06 56.6 408 21.6
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 7.4e-06 56.2 53 47.2
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 7.4e-06 56.2 229 24.0


User provided reference genes

Program Settings