Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.4e-292 1008.8 498 100.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.4e-217 758.1 461 83.9
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.6e-201 705.7 462 77.1
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.3e-197 693.3 465 76.6
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 5.5e-196 688.0 450 76.2
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 8.0e-195 684.1 494 71.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 1.0e-194 683.7 465 75.5
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 5.2e-194 681.4 462 74.2
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.2e-192 676.0 474 71.3
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.4e-191 673.3 461 74.8
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.9e-189 665.6 460 72.0
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.9e-189 665.2 462 72.5
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 8.6e-189 664.1 461 71.6
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 1.1e-188 663.7 462 73.2
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.5e-188 662.5 460 72.2
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.6e-187 659.8 462 71.9
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 3.6e-187 658.7 423 75.4
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 4.7e-187 658.3 463 71.9
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 5.2e-186 654.8 447 73.4
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 5.2e-186 654.8 461 71.4
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 6.8e-186 654.4 433 73.7
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.5e-185 653.3 461 70.9
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 2.2e-184 649.4 460 68.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.2e-184 649.4 460 72.0
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 3.7e-184 648.7 482 69.5
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 6.4e-184 647.9 463 70.6
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 9.2e-183 644.0 459 71.0
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 9.2e-183 644.0 458 70.1
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 9.2e-183 644.0 463 70.6
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 3.5e-182 642.1 463 69.8
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 3.5e-182 642.1 457 70.7
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.8e-182 641.0 463 72.1
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.3e-181 640.2 461 71.6
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.7e-181 639.8 462 70.8
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 6.6e-181 637.9 462 70.8
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 6.6e-181 637.9 422 76.8
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 6.6e-181 637.9 460 70.9
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 8.6e-181 637.5 432 72.0
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 3.6e-179 632.1 469 68.2
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 8.1e-179 630.9 448 70.8
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.1e-178 630.6 461 69.0
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.8e-178 629.8 469 69.7
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.0e-178 628.6 461 69.0
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 5.2e-178 628.2 457 70.7
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 2.6e-177 625.9 432 73.6
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.6e-177 625.9 442 73.3
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.9e-176 622.5 459 68.0
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.4e-175 620.2 462 67.1
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 9.2e-175 617.5 461 67.7
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 2.7e-174 615.9 470 67.7
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 2.7e-174 615.9 470 67.7
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 7.8e-174 614.4 422 73.7
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.7e-173 613.2 469 67.8
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 3.0e-173 612.5 431 70.1
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 7.3e-172 607.8 464 68.1
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 9.5e-172 607.4 458 69.4
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.2e-171 607.1 465 67.3
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.1e-171 606.3 432 68.1
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 3.6e-171 605.5 425 70.6
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.4e-170 603.6 462 66.2
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 8.9e-170 600.9 431 69.8
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 3.4e-169 599.0 424 71.2
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 7.6e-169 597.8 427 69.3
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 2.9e-168 595.9 426 69.7
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.4e-168 594.7 442 67.9
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 6.4e-168 594.7 457 66.1
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 4.1e-167 592.0 385 76.4
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 5.4e-167 591.7 463 66.1
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 7.1e-167 591.3 462 66.0
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 9.2e-167 590.9 466 66.1
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 4.6e-166 588.6 467 67.0
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.3e-165 587.0 466 65.2
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.6e-165 584.7 466 65.5
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.3e-164 582.4 460 65.2
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 4.3e-164 582.0 442 64.9
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.8e-163 579.3 460 64.8
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.1e-162 577.4 436 64.7
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.1e-162 577.4 495 62.8
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 4.0e-162 575.5 434 63.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 5.2e-162 575.1 434 64.5
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 5.2e-162 575.1 434 64.3
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.5e-161 573.5 442 67.2
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.2e-160 569.7 442 63.1
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.2e-160 569.7 460 64.1
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 6.4e-160 568.2 435 68.5
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.1e-158 563.1 426 66.7
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.1e-158 563.1 463 63.3
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 5.1e-157 558.5 447 60.9
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 9.6e-156 554.3 437 62.7
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 2.2e-152 543.1 436 61.9
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 2.2e-152 543.1 436 61.9
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 8.4e-152 541.2 435 61.8
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.9e-151 540.0 434 62.0
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-149 533.9 461 61.6
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 5.1e-149 531.9 460 61.3
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 2.8e-147 526.2 435 60.9
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.8e-146 523.5 431 61.3
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 9.9e-145 517.7 463 60.5
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.4e-143 513.8 424 58.7
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 7.1e-143 511.5 463 61.1
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 4.6e-142 508.8 421 60.6
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.3e-141 507.3 434 59.2
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 3.1e-138 496.1 325 77.2
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 6.9e-138 495.0 425 57.6
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.6e-137 493.0 304 80.6
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 5.8e-137 491.9 491 56.0
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.6e-134 483.8 434 57.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.8e-130 470.3 427 55.3
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 3.1e-122 443.0 287 78.7
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.4e-119 434.1 424 55.9
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 8.2e-115 418.3 437 49.9
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.2e-112 410.2 371 56.9
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.4e-111 407.5 425 49.2
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.8e-109 400.6 298 70.1
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 5.3e-106 389.0 280 72.1
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.5e-104 382.1 439 48.5
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.6e-102 377.5 435 49.0
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 7.0e-98 362.1 241 75.5
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 2.5e-95 353.6 422 46.9
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.3e-91 338.6 208 79.8
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.2e-89 334.7 319 52.0
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.5e-87 327.0 251 69.3
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 3.5e-81 306.6 215 71.2
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 3.3e-79 300.1 436 39.9
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 4.7e-78 296.2 236 66.1
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.2e-75 287.3 244 64.8
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.3e-75 285.4 188 75.5
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.3e-72 278.1 177 76.8
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.5e-68 264.6 220 61.4
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 5.8e-68 262.7 216 59.3
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 8.3e-59 232.3 171 70.2
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.1e-58 229.9 132 82.6
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.0e-56 225.3 144 72.9
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.0e-56 225.3 187 58.8
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 7.1e-50 202.6 265 45.7
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 7.1e-50 202.6 174 56.9
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 4.4e-44 183.3 114 73.7
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 7.6e-44 182.6 201 47.8
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.5e-39 168.3 274 41.2
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.2e-36 158.7 199 49.7
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.9e-32 143.7 80 86.2
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.2e-14 82.8 43 88.4
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 4.2e-10 70.5 335 22.7
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 7.9e-09 66.2 199 26.6
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.3e-08 64.7 47 57.4


User provided reference genes

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