Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 3.0e-210 734.9 375 100.0
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 2.4e-143 512.7 280 86.1
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 9.1e-143 510.8 280 86.1
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 1.2e-142 510.4 280 85.7
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 2.0e-142 509.6 279 84.6
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 1.0e-141 507.3 280 83.9
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 1.5e-140 503.4 279 84.6
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 5.5e-140 501.5 280 83.2
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 1.3e-136 490.3 280 82.1
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 1.2e-134 483.8 281 81.5
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 8.6e-133 477.6 280 79.6
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 5.6e-132 474.9 281 78.6
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 7.3e-132 474.6 305 74.8
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 4.7e-131 471.9 312 74.0
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 4.7e-131 471.9 280 78.6
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 1.8e-130 469.9 280 78.2
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 5.2e-130 468.4 280 76.8
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 1.2e-129 467.2 281 79.4
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 2.6e-129 466.1 280 78.2
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 4.9e-128 461.8 280 75.7
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 8.3e-128 461.1 280 76.1
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 8.3e-128 461.1 281 77.9
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 2.4e-127 459.5 280 76.4
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 1.6e-126 456.8 280 75.4
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 1.3e-125 453.8 281 75.4
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 1.3e-125 453.8 280 75.7
Potri.003G138300 Populus trichocarpa HOM05D005266 ORTHO05D006416 1.7e-125 453.4 280 75.7
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 2.3e-125 453.0 280 75.7
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 2.3e-125 453.0 281 76.9
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 3.9e-125 452.2 280 74.6
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.5e-124 450.3 281 75.1
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.5e-124 450.3 281 75.1
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 1.5e-124 450.3 280 73.6
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 1.9e-124 449.9 280 73.6
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 1.9e-124 449.9 281 74.7
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.5e-124 449.5 281 74.7
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.5e-124 449.5 281 75.1
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 7.3e-124 448.0 280 74.6
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 9.5e-124 447.6 280 73.6
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 4.7e-123 445.3 281 74.4
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 6.2e-123 444.9 280 73.6
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 8.0e-123 444.5 280 72.9
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 8.0e-123 444.5 280 74.6
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 8.9e-122 441.0 280 73.6
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 1.2e-121 440.7 280 73.2
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 1.2e-121 440.7 282 72.3
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 3.4e-121 439.1 280 72.9
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 2.2e-120 436.4 318 66.7
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 4.9e-120 435.3 280 71.8
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 1.9e-119 433.3 282 72.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 3.2e-119 432.6 280 72.5
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 4.1e-119 432.2 280 71.8
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 5.4e-119 431.8 282 71.3
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 6.0e-118 428.3 280 70.7
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.3e-117 427.2 280 69.6
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.7e-117 426.8 280 69.6
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 3.0e-117 426.0 282 69.9
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 3.0e-117 426.0 280 70.7
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 3.0e-117 426.0 283 71.0
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 5.1e-117 425.2 280 70.4
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 5.1e-117 425.2 280 71.8
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 1.5e-116 423.7 283 70.0
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 1.5e-116 423.7 285 69.1
TAR307G0004 Trochodendron aralioides HOM05D005266 ORTHO05D006416 1.5e-116 423.7 280 72.9
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 3.3e-116 422.5 280 69.6
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 5.6e-116 421.8 280 70.7
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 9.5e-116 421.0 282 70.6
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.2e-115 420.6 280 68.2
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 2.1e-115 419.9 281 73.0
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 3.6e-115 419.1 281 69.0
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 2.3e-114 416.4 280 67.9
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 3.1e-114 416.0 283 67.5
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 8.9e-114 414.5 280 68.6
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 8.9e-114 414.5 282 68.4
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 2.0e-113 413.3 280 66.8
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 2.0e-113 413.3 280 68.2
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 2.6e-113 412.9 281 72.6
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 3.4e-113 412.5 280 69.6
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 1.3e-112 410.6 280 70.4
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 1.3e-112 410.6 281 68.7
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 6.4e-112 408.3 281 68.3
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 6.4e-112 408.3 281 68.3
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 8.3e-112 407.9 281 68.0
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 1.4e-111 407.1 280 68.2
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 3.2e-111 406.0 281 67.6
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 3.2e-111 406.0 281 68.3
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 3.2e-111 406.0 283 65.4
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 7.1e-111 404.8 324 61.4
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 1.2e-110 404.1 277 69.7
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 3.5e-110 402.5 283 66.4
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 1.3e-109 400.6 282 66.3
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.9e-108 396.7 281 66.5
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 3.3e-108 396.0 280 66.4
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 2.1e-107 393.3 280 65.7
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 8.1e-107 391.3 282 66.3
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 7.1e-103 378.3 280 65.7
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 2.1e-99 366.7 280 58.9
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 6.9e-98 361.7 280 57.9
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 2.0e-97 360.1 230 75.2
AUR62019818 Chenopodium quinoa HOM05D005266 ORTHO05D006416 4.4e-97 359.0 233 74.2
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 3.8e-96 355.9 280 61.4
SEGI_13107 Sequoiadendron giganteum HOM05D005266 ORTHO05D006416 1.1e-92 344.4 280 54.3
MD14G1133100 Malus domestica HOM05D005266 ORTHO05D006416 2.1e-91 340.1 280 62.5
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 1.1e-82 311.2 186 75.8
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 7.1e-79 298.5 281 52.7
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 8.2e-75 285.0 158 84.2
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 2.3e-69 266.9 159 77.4
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 1.5e-68 264.2 164 71.3
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 9.7e-68 261.5 284 45.4
Mapoly0117s0010 Marchantia polymorpha HOM05D005266 ORTHO05D006416 3.4e-65 253.1 277 43.7
AagrBONN_evm.TU.Sc2ySwM_344.5454 Anthoceros agrestis HOM05D005266 ORTHO05D006416 3.0e-61 240.0 275 42.5
MD15G1317600 Malus domestica HOM05D005266 ORTHO05D006416 1.5e-57 227.6 170 64.1
Pp3c5_28960 Physcomitrium patens HOM05D005266 ORTHO05D006416 1.4e-55 221.1 278 39.2
Thhalv10023957m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 1.5e-52 211.1 161 60.2
SMO147G0195 Selaginella moellendorffii HOM05D005266 ORTHO05D006416 1.3e-51 208.0 282 38.7
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 1.8e-42 177.6 156 58.3
MD17G1262800 Malus domestica HOM05D005266 ORTHO05D006416 9.4e-39 165.2 111 67.6
ATR0589G038 Amborella trichopoda HOM05D005266 ORTHO05D006416 4.7e-38 162.9 123 59.3
MD06G1116200 Malus domestica HOM05D005266 ORTHO05D006416 4.0e-37 159.8 159 53.5
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 1.1e-31 141.7 74 87.8
TAR303G0001 Trochodendron aralioides HOM05D005266 ORTHO05D003403 1.6e-30 137.9 78 85.9
TPR.G25299 Trifolium pratense HOM05D005266 ORTHO05D006416 8.0e-22 109.0 137 44.5
CDE08G0252 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 9.8e-20 102.1 112 43.8
Thecc.02G222700 Theobroma cacao HOM05D005266 ORTHO05D006416 1.7e-19 101.3 166 35.5
Dinv09469 Davidia involucrata HOM05D003061 ORTHO05D003427 1.4e-18 98.2 50 84.0
Hund07659 Selenicereus undatus HOM05D005266 ORTHO05D006416 1.2e-17 95.1 178 34.8
Thecc.02G199200 Theobroma cacao HOM05D005266 ORTHO05D006416 1.6e-17 94.7 186 34.4
FAN13G3269 Fragaria x ananassa HOM05D000100 ORTHO05D000052 2.7e-17 94.0 67 64.2
FAN18G1945 Fragaria x ananassa HOM05D005266 ORTHO05D006416 5.9e-17 92.8 67 65.7
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 2.3e-13 80.9 189 30.7
Rhsim03G0018500 Rhododendron simsii HOM05D005266 ORTHO05D006416 2.6e-12 77.4 37 86.5
MBI01_g05788_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 3.4e-12 77.0 103 41.7
TPR.G25301 Trifolium pratense HOM05D005266 ORTHO05D006416 5.8e-12 76.3 69 55.1
CBR_g26176 Chara braunii HOM05D005266 ORTHO05D006416 1.3e-11 75.1 123 31.7
MBI01_g28590_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 2.2e-11 74.3 56 66.1
TPR.G32052 Trifolium pratense HOM05D000002 ORTHO05D000001 2.9e-11 73.9 153 34.0
Dinv14680 Davidia involucrata HOM05D008126 ORTHO05D000309 6.4e-11 72.8 50 62.0
FAN05G0040 Fragaria x ananassa HOM05D002410 ORTHO05D002805 6.4e-11 72.8 253 25.3
Dinv14019 Davidia involucrata HOM05D003061 ORTHO05D006416 8.3e-11 72.4 34 88.2
Dinv26432 Davidia involucrata HOM05D001383 ORTHO05D000309 1.4e-10 71.6 50 62.0
Rhsim12G0186300 Rhododendron simsii HOM05D005266 ORTHO05D006416 5.4e-10 69.7 70 57.1
HPP92_007979 Vanilla planifolia HOM05D002410 ORTHO05D002805 9.2e-10 68.9 248 27.0
Rhsim11G0046300 Rhododendron simsii HOM05D001383 ORTHO05D000309 1.6e-09 68.2 42 64.3
Hma1.2p1_1382F.1_g279350 Hydrangea macrophylla HOM05D008126 ORTHO05D000309 4.6e-09 66.6 47 55.3
Dinv22727 Davidia involucrata HOM05D008126 ORTHO05D000309 6.0e-09 66.2 41 68.3
Dinv41031 Davidia involucrata HOM05D001383 ORTHO05D000309 6.0e-09 66.2 50 58.0
Thecc.03G165000 Theobroma cacao HOM05D005266 ORTHO05D006416 6.0e-09 66.2 44 61.4
Cre03.g192000 Chlamydomonas reinhardtii HOM05D005266 ORTHO05D006416 1.3e-08 65.1 287 23.0
ATR0772G101 Amborella trichopoda HOM05D002410 ORTHO05D002805 1.7e-08 64.7 246 25.2
Dinv12011 Davidia involucrata HOM05D015331 ORTHO05D000309 3.0e-08 63.9 50 54.0
FvH4_6g32220 Fragaria vesca HOM05D002410 ORTHO05D002805 3.9e-08 63.5 253 23.7
FAN14G4882 Fragaria x ananassa HOM05D002410 ORTHO05D002805 3.9e-08 63.5 253 23.7
Rhsim10G0147400 Rhododendron simsii HOM05D005266 ORTHO05D006416 6.6e-08 62.8 38 73.7
FAN02G2055 Fragaria x ananassa HOM05D002410 ORTHO05D002805 1.5e-07 61.6 254 23.2
Hma1.2p1_1051F.1_g252070 Hydrangea macrophylla HOM05D008126 ORTHO05D000309 1.9e-07 61.2 37 64.9
Hund08403 Selenicereus undatus HOM05D006468 ORTHO05D006908 1.9e-07 61.2 38 71.1
FAN09G0273 Fragaria x ananassa HOM05D002410 ORTHO05D002805 2.5e-07 60.8 253 23.7
Cre17.g715750 Chlamydomonas reinhardtii HOM05D002410 ORTHO05D002805 3.3e-07 60.5 245 25.7
SMO364G0742 Selaginella moellendorffii HOM05D002410 ORTHO05D002805 7.3e-07 59.3 252 23.0
BolC2t11043H Brassica oleracea HOM05D005266 ORTHO05D006416 2.1e-06 57.8 86 46.5
Os02g0135800 Oryza sativa ssp. japonica HOM05D002410 ORTHO05D002805 2.8e-06 57.4 248 24.2


User provided reference genes

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