Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38777 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1502.6 803 100.0
Dinv10682 Davidia involucrata HOM05D001674 ORTHO05D008599 0.0e+00 1281.5 818 86.8
vmacro17586 Vaccinium macrocarpon HOM05D001674 ORTHO05D008599 0.0e+00 1128.6 819 77.4
TAR629G0913 Trochodendron aralioides HOM05D001674 ORTHO05D008599 0.0e+00 1104.4 828 74.4
GSVIVG01007917001 Vitis vinifera HOM05D001674 ORTHO05D008599 0.0e+00 1081.2 818 74.6
Actinidia09243 Actinidia chinensis HOM05D001674 ORTHO05D008599 0.0e+00 1077.0 812 75.2
Actinidia04849 Actinidia chinensis HOM05D001674 ORTHO05D008599 4.4e-304 1047.7 817 72.7
QL10p018629 Quercus lobata HOM05D001674 ORTHO05D008599 2.1e-301 1038.9 820 71.5
Nn4g23353 Nelumbo nucifera HOM05D001674 ORTHO05D008599 2.5e-299 1031.9 827 71.3
Lj5A106T70 Lonicera japonica HOM05D001674 ORTHO05D008599 2.6e-296 1021.9 819 72.2
Thecc.03G096700 Theobroma cacao HOM05D001674 ORTHO05D008599 1.3e-292 1009.6 821 70.3
DCAR_031671 Daucus carota HOM05D001674 ORTHO05D008599 7.4e-291 1003.8 817 69.4
Rhsim08G0149500 Rhododendron simsii HOM05D001674 ORTHO05D008599 1.8e-289 999.2 741 76.5
Gohir.D11G036200 Gossypium hirsutum HOM05D001674 ORTHO05D008599 2.9e-287 991.9 831 68.5
COL.COLO4_36885 Corchorus olitorius HOM05D001674 ORTHO05D008599 4.9e-287 991.1 823 69.0
Prupe.5G200400 Prunus persica HOM05D001674 ORTHO05D008599 7.9e-285 983.8 824 68.4
Atru.chr9.280 Acer truncatum HOM05D001674 ORTHO05D008599 5.1e-284 981.1 823 68.7
Cc00_g02250 Coffea canephora HOM05D001674 ORTHO05D008599 8.7e-284 980.3 820 69.5
Duzib068G0733 Durio zibethinus HOM05D001674 ORTHO05D008599 5.7e-283 977.6 819 68.7
Hma1.2p1_0060F.1_g033350 Hydrangea macrophylla HOM05D001674 ORTHO05D008599 2.4e-281 972.2 777 71.4
Ciclev10018469m.g Citrus clementina HOM05D001674 ORTHO05D008599 2.0e-280 969.1 822 68.2
Gohir.A11G032900 Gossypium hirsutum HOM05D001674 ORTHO05D008599 4.5e-280 968.0 831 67.4
PGR083G0537 Punica granatum HOM05D001674 ORTHO05D008599 1.3e-279 966.5 837 66.3
Sabra12G0048200 Salix brachista HOM05D001674 ORTHO05D008599 3.5e-277 958.4 959 60.7
Migut.D01672 Erythranthe guttata HOM05D001674 ORTHO05D008599 1.5e-275 953.0 822 67.0
Potri.012G066900 Populus trichocarpa HOM05D001674 ORTHO05D008599 2.8e-274 948.7 779 70.0
Gorai.007G039000 Gossypium raimondii HOM05D001674 ORTHO05D008599 1.8e-273 946.0 831 66.3
TWI15G1152 Tripterygium wilfordii HOM05D001674 ORTHO05D008599 5.5e-270 934.5 815 66.4
Manes.06G087600 Manihot esculenta HOM05D001674 ORTHO05D008599 1.2e-269 933.3 839 65.9
Aqoxy3G00452 Aquilegia oxysepala HOM05D001674 ORTHO05D008599 1.6e-269 932.9 820 66.1
CANSAT80G0851 Cannabis sativa HOM05D001674 ORTHO05D008599 1.6e-269 932.9 825 65.9
Nitab4.5_0004511g0020 Nicotiana tabacum HOM05D001674 ORTHO05D008599 1.4e-268 929.9 819 66.4
Lalb_Chr13g0302981 Lupinus albus HOM05D001674 ORTHO05D008599 1.7e-266 922.9 821 64.7
Peaxi162Scf00201g00021 Petunia axillaris HOM05D001674 ORTHO05D008599 2.8e-266 922.2 818 65.0
Cpa.g.sc94.3 Carica papaya HOM05D001674 ORTHO05D008599 6.3e-266 921.0 823 65.0
Phvul.003G186700 Phaseolus vulgaris HOM05D001674 ORTHO05D008599 1.2e-264 916.8 820 65.5
VMungo1215G3312 Vigna mungo HOM05D001674 ORTHO05D008599 1.3e-263 913.3 822 64.4
Solyc03g115510.3 Solanum lycopersicum HOM05D001674 ORTHO05D008599 2.5e-262 909.1 818 65.2
CAN.G479.33 Capsicum annuum HOM05D001674 ORTHO05D008599 3.2e-262 908.7 817 64.1
Oeu032213.1 Olea europaea HOM05D001674 ORTHO05D008599 3.2e-262 908.7 848 63.8
HanXRQChr04g0107361 Helianthus annuus HOM05D001674 ORTHO05D008599 2.1e-261 906.0 808 65.2
Sopen03g034510 Solanum pennellii HOM05D001674 ORTHO05D008599 3.0e-260 902.1 818 64.7
Hund02613 Selenicereus undatus HOM05D001674 ORTHO05D008599 1.1e-259 900.2 825 64.4
Glyma.17G076400 Glycine max HOM05D001674 ORTHO05D008599 2.2e-258 896.0 822 62.8
Glyma.05G023300 Glycine max HOM05D001674 ORTHO05D008599 2.8e-258 895.6 822 63.1
TPR.G2046 Trifolium pratense HOM05D001674 ORTHO05D008599 2.8e-258 895.6 823 63.5
RcHm_v2.0_Chr7g0182421 Rosa chinensis HOM05D001674 ORTHO05D008599 3.1e-257 892.1 827 62.9
Medtr4g109230 Medicago truncatula HOM05D001674 ORTHO05D008599 2.0e-256 889.4 824 63.3
Psat4g048680 Pisum sativum HOM05D001674 ORTHO05D008599 2.6e-256 889.0 824 62.9
SalBow7G3498 Salvia bowleyana HOM05D001674 ORTHO05D008599 2.6e-256 889.0 831 62.1
ClCG06G015860 Citrullus lanatus HOM05D001674 ORTHO05D008599 5.9e-256 887.9 825 64.1
Haze_07676 Corylus avellana HOM05D001674 ORTHO05D008599 7.7e-256 887.5 744 70.0
AUR62021608 Chenopodium quinoa HOM05D001674 ORTHO05D008599 2.9e-255 885.6 823 62.5
Lsat_1_v5_gn_1_13760 Lactuca sativa HOM05D001674 ORTHO05D008599 3.8e-255 885.2 792 65.5
ECA247G0462 Erigeron canadensis HOM05D001674 ORTHO05D008599 6.5e-255 884.4 816 63.4
Sed0027646 Sechium edule HOM05D001674 ORTHO05D008599 8.5e-255 884.0 825 64.4
Lj4g0011824 Lotus japonicus HOM05D001674 ORTHO05D008599 1.5e-254 883.2 822 62.3
MELO3C017205.2 Cucumis melo HOM05D001674 ORTHO05D008599 4.2e-254 881.7 827 64.1
Eucgr.B00566 Eucalyptus grandis HOM05D001674 ORTHO05D008599 2.1e-253 879.4 826 63.3
FvH4_5g14340 Fragaria vesca HOM05D001674 ORTHO05D008599 2.1e-253 879.4 822 62.4
CsaV3_1G002700 Cucumis sativus L. HOM05D001674 ORTHO05D008599 1.0e-252 877.1 826 63.6
FAN13G3105 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.3e-252 875.9 822 62.3
FAN18G2329 Fragaria x ananassa HOM05D001674 ORTHO05D008599 2.3e-252 875.9 822 62.2
AUR62008489 Chenopodium quinoa HOM05D001674 ORTHO05D008599 4.0e-252 875.2 823 62.0
Ca_21793_v3 Cicer arietinum L. HOM05D001674 ORTHO05D008599 5.7e-251 871.3 817 62.5
FAN08G0876 Fragaria x ananassa HOM05D001674 ORTHO05D008599 4.8e-250 868.2 826 61.1
arahy.Tifrunner.gnm1.ann1.MMN4BF Arachis hypogaea HOM05D001674 ORTHO05D008599 1.2e-248 863.6 827 61.4
PSO478G4640 Papaver somniferum HOM05D001674 ORTHO05D008599 1.6e-248 863.2 816 61.8
MSTRG.9602 Avicennia marina HOM05D001674 ORTHO05D008599 4.0e-244 848.6 827 60.9
PSO017G4474 Papaver somniferum HOM05D001674 ORTHO05D008599 2.5e-238 829.3 816 60.2
SGA_v2.0_scaffold3G01735 Striga asiatica HOM05D001674 ORTHO05D008599 2.3e-228 796.2 862 57.8
Nitab4.5_0020510g0010 Nicotiana tabacum HOM05D001674 ORTHO05D008599 1.2e-221 773.9 739 63.6
Sc12g0006570 Simmondsia chinensis HOM05D001674 ORTHO05D008599 5.2e-220 768.5 775 60.0
PGSC0003DMG400024553 Solanum tuberosum HOM05D001674 ORTHO05D008599 1.9e-217 760.0 739 61.7
ATR0064G082 Amborella trichopoda HOM05D001674 ORTHO05D008599 3.0e-215 752.7 839 54.4
CiPaw.11G049600 Carya illinoinensis HOM05D001674 ORTHO05D008599 1.5e-214 750.4 823 57.8
SEGI_10628 Sequoiadendron giganteum HOM05D001674 ORTHO05D008599 4.1e-201 705.7 851 51.5
Zm00001eb108430 Zea mays HOM05D001674 ORTHO05D008599 1.7e-199 700.3 754 57.3
unitig_37.g12722 Utricularia gibba HOM05D001674 ORTHO05D008599 8.7e-191 671.4 855 51.5
Ah.02g113890 Amaranthus hybridus HOM05D001674 ORTHO05D008599 1.1e-169 601.3 678 56.6
AagrBONN_evm.TU.Sc2ySwM_228.3354 Anthoceros agrestis HOM05D001674 ORTHO05D008599 2.1e-168 597.0 857 45.7
Pp3c11_9170 Physcomitrium patens HOM05D001674 ORTHO05D008599 2.4e-164 583.6 869 44.8
MD14G1208500 Malus domestica HOM05D001674 ORTHO05D008599 1.1e-161 574.7 470 70.9
SMO117G0045 Selaginella moellendorffii HOM05D001674 ORTHO05D008599 5.1e-151 539.3 824 43.4
CDE07G0117 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 1.7e-141 507.7 569 56.2
Pp3c1_9760 Physcomitrium patens HOM05D001674 ORTHO05D008599 2.1e-91 341.3 748 36.9
Actinidia09199 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.1e-87 327.4 683 40.0
Os06g0235300 Oryza sativa ssp. japonica HOM05D001674 ORTHO05D008599 2.5e-73 281.2 305 59.0
Ah.02g113880 Amaranthus hybridus HOM05D001674 ORTHO05D008599 5.8e-62 243.4 144 78.5
MD14G1208300 Malus domestica HOM05D001674 ORTHO05D008599 1.7e-45 188.7 104 80.8
Actinidia09211 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.2e-43 182.6 292 45.5
Rhsim08G0149700 Rhododendron simsii HOM05D001674 ORTHO05D008599 2.7e-35 154.8 84 84.5
CDE07G0766 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 7.9e-35 153.3 100 85.0
Nitab4.5_0002881g0120 Nicotiana tabacum HOM05D001674 ORTHO05D008599 7.9e-35 153.3 97 77.3
CDE07G0655 Ceratophyllum demersum HOM05D001674 ORTHO05D008599 4.8e-32 144.1 80 82.5
Actinidia09202 Actinidia chinensis HOM05D001674 ORTHO05D008599 3.5e-30 137.9 241 44.4
Actinidia09203 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.0e-29 136.3 152 61.8
Actinidia09209 Actinidia chinensis HOM05D001674 ORTHO05D008599 1.7e-29 135.6 93 72.0
CBR_g23198 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-26 125.2 220 36.4
PRCOL_00000483 Prasinoderma coloniale HOM05D001674 ORTHO05D008599 6.3e-24 117.1 802 24.3
MCO15G104 Micromonas commoda HOM05D001674 ORTHO05D008599 1.1e-23 116.3 221 33.0
CBR_g23193 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-22 110.9 104 56.7
Cre16.g679400 Chlamydomonas reinhardtii HOM05D001674 ORTHO05D008599 1.8e-18 99.0 276 27.5
Migut.C00071 Erythranthe guttata HOM05D001674 ORTHO05D008599 2.3e-18 98.6 148 52.7
Actinidia09210 Actinidia chinensis HOM05D001674 ORTHO05D008599 6.7e-18 97.1 208 40.4
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 2.4e-15 88.6 63 66.7
TAR376G0971 Trochodendron aralioides HOM05D001674 ORTHO05D008599 5.5e-12 77.4 43 79.1
CBR_g23210 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-09 69.7 50 54.0


User provided reference genes

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