Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 6.1e-167 590.9 330 100.0
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.2e-125 453.8 289 79.6
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 9.9e-125 450.7 294 80.3
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 7.1e-123 444.5 311 72.7
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.7e-121 439.9 259 86.5
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 1.7e-121 439.9 267 83.1
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 3.6e-119 432.2 300 80.3
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 8.1e-119 431.0 265 80.8
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.4e-118 430.3 265 80.8
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 1.8e-118 429.9 260 83.8
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 4.0e-118 428.7 266 79.7
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 5.3e-118 428.3 292 80.5
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 9.0e-118 427.6 291 76.6
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 1.5e-117 426.8 291 75.9
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 2.6e-117 426.0 265 79.6
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.6e-117 426.0 261 79.3
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 5.8e-117 424.9 295 73.2
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.3e-116 423.7 317 67.8
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 2.2e-116 422.9 317 73.5
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 2.2e-116 422.9 317 68.1
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.2e-116 422.9 299 74.9
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 1.1e-115 420.6 294 77.2
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 3.2e-115 419.1 317 67.2
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 5.4e-115 418.3 291 72.5
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 7.1e-115 417.9 268 77.6
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.7e-114 416.0 291 75.6
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 6.0e-114 414.8 293 76.5
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 1.0e-113 414.1 297 73.4
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 2.3e-113 412.9 297 74.1
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 3.0e-113 412.5 263 77.2
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 3.9e-113 412.1 297 72.1
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 6.6e-113 411.4 297 72.7
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 8.7e-113 411.0 291 71.5
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 1.1e-112 410.6 293 74.7
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 1.5e-112 410.2 291 71.5
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 4.3e-112 408.7 266 75.9
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 5.6e-112 408.3 295 69.5
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 1.6e-111 406.8 258 79.8
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 1.8e-110 403.3 294 73.5
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 3.1e-110 402.5 289 75.1
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 9.0e-110 401.0 299 70.9
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 2.0e-109 399.8 259 75.7
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 2.6e-109 399.4 259 76.1
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 3.4e-109 399.1 325 64.3
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 3.4e-109 399.1 262 75.6
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 4.5e-109 398.7 259 75.3
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 9.9e-109 397.5 268 75.4
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 2.2e-108 396.4 300 71.0
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 1.1e-107 394.0 245 78.4
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 1.4e-107 393.7 258 78.7
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 9.3e-107 391.0 259 75.3
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 1.6e-106 390.2 261 76.2
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 2.1e-106 389.8 263 74.1
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 2.7e-106 389.4 258 73.3
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 3.5e-106 389.0 261 76.2
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 4.6e-106 388.7 269 72.9
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 1.3e-105 387.1 261 75.1
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 3.0e-105 386.0 258 74.8
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 3.0e-105 386.0 293 69.3
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 6.7e-105 384.8 257 74.3
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 8.7e-105 384.4 257 75.1
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 8.7e-105 384.4 263 72.2
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 8.7e-105 384.4 260 75.0
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 1.1e-104 384.0 257 74.3
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 2.5e-104 382.9 264 71.6
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 2.5e-104 382.9 264 71.6
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 2.5e-104 382.9 258 74.0
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 4.3e-104 382.1 258 73.6
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 2.1e-103 379.8 297 67.7
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 2.1e-103 379.8 261 72.0
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 3.7e-103 379.0 258 72.9
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 4.8e-103 378.6 260 75.0
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 8.1e-103 377.9 260 75.0
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 1.8e-102 376.7 263 71.1
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.8e-102 376.7 242 75.2
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 5.3e-102 375.2 263 71.9
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 5.3e-102 375.2 261 71.6
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 6.9e-102 374.8 257 72.4
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 9.0e-102 374.4 261 73.9
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 1.2e-101 374.0 261 73.9
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 5.8e-101 371.7 269 72.1
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 1.0e-100 370.9 201 89.6
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 1.7e-100 370.2 292 66.1
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 2.2e-100 369.8 314 65.0
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 4.9e-100 368.6 266 71.1
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 6.5e-100 368.2 263 71.5
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 1.4e-99 367.1 288 70.8
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 1.4e-99 367.1 261 69.7
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 3.2e-99 365.9 235 72.3
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 4.2e-99 365.5 265 71.7
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 3.3e-96 355.9 260 67.3
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 2.8e-95 352.8 262 66.4
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 2.6e-93 346.3 257 68.1
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 1.2e-90 337.4 235 70.2
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 3.9e-89 332.4 278 61.5
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 3.3e-88 329.3 291 63.6
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 1.3e-87 327.4 246 69.5
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.1e-78 297.7 309 59.2
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.0e-77 293.5 273 59.7
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 6.7e-73 278.5 269 51.7
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 4.4e-72 275.8 261 55.9
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 4.5e-69 265.8 262 53.1
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 6.5e-68 261.9 209 65.6
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 1.1e-67 261.2 264 56.8
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 4.7e-66 255.8 295 56.3
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 3.3e-64 249.6 169 75.1
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 9.7e-64 248.1 173 71.7
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 9.4e-59 231.5 289 54.7
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 2.3e-57 226.9 185 68.6
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 4.4e-56 222.6 298 43.3
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 4.5e-53 212.6 235 50.2
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 2.1e-50 203.8 202 56.9
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 4.1e-46 189.5 182 58.8
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 5.9e-45 185.7 123 78.9
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 3.2e-38 163.3 138 62.3
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 4.1e-38 162.9 260 38.1
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 2.7e-37 160.2 330 32.1
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 2.2e-15 87.4 86 48.8
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 4.6e-13 79.7 63 63.5
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.3e-12 78.2 51 66.7
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.0e-12 77.0 45 91.1
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 1.5e-11 74.7 75 52.0
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.8e-09 67.8 44 75.0
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 4.0e-09 66.6 47 68.1
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.5e-08 64.7 38 89.5
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 2.0e-08 64.3 39 71.8
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.3e-07 61.6 52 55.8


User provided reference genes

Program Settings