Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38002 Davidia involucrata HOM05D003052 ORTHO05D003434 1.2e-92 343.2 171 100.0
Dinv30462 Davidia involucrata HOM05D003052 ORTHO05D003434 4.7e-54 214.9 129 85.3
CSS0008444 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 7.8e-49 197.6 129 76.7
CSS0044455 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 6.6e-48 194.5 129 76.0
GSVIVG01017041001 Vitis vinifera HOM05D003052 ORTHO05D003434 2.4e-45 186.0 129 71.3
QL05p021189 Quercus lobata HOM05D003052 ORTHO05D003434 4.0e-45 185.3 131 73.3
TAR636G2854 Trochodendron aralioides HOM05D003052 ORTHO05D003434 2.0e-44 183.0 143 69.9
QL06p043845 Quercus lobata HOM05D003052 ORTHO05D003434 3.4e-44 182.2 131 72.5
DCAR_016201 Daucus carota HOM05D003052 ORTHO05D003434 4.4e-44 181.8 137 68.6
Thecc.06G095600 Theobroma cacao HOM05D003052 ORTHO05D003434 1.9e-42 176.4 131 67.9
COL.COLO4_30469 Corchorus olitorius HOM05D003052 ORTHO05D003434 3.2e-42 175.6 133 68.4
Manes.11G036400 Manihot esculenta HOM05D003052 ORTHO05D003434 7.1e-42 174.5 131 69.5
Ciclev10026544m.g Citrus clementina HOM05D003052 ORTHO05D003434 3.5e-41 172.2 131 67.9
Duzib192G0284 Durio zibethinus HOM05D003052 ORTHO05D003434 6.6e-40 167.9 131 63.4
Oeu024075.1 Olea europaea HOM05D003052 ORTHO05D003434 2.5e-39 166.0 132 64.4
Oeu024077.1 Olea europaea HOM05D003052 ORTHO05D003434 2.5e-39 166.0 132 64.4
Eucgr.F03055 Eucalyptus grandis HOM05D003052 ORTHO05D003434 4.3e-39 165.2 130 65.4
Actinidia21697 Actinidia chinensis HOM05D003052 ORTHO05D003434 7.3e-39 164.5 131 65.6
Potri.001G186800 Populus trichocarpa HOM05D003052 ORTHO05D003434 8.1e-38 161.0 129 65.9
CiPaw.02G147600 Carya illinoinensis HOM05D003052 ORTHO05D003434 1.8e-37 159.8 133 65.4
Rhsim08G0225500 Rhododendron simsii HOM05D003052 ORTHO05D003434 3.1e-37 159.1 135 64.4
Atru.chr1.3469 Acer truncatum HOM05D003052 ORTHO05D003434 6.9e-37 157.9 137 62.8
Haze_16336 Corylus avellana HOM05D003052 ORTHO05D003434 1.5e-36 156.8 130 63.8
Gorai.011G072900 Gossypium raimondii HOM05D003052 ORTHO05D003434 2.0e-36 156.4 134 60.4
Gohir.D10G069000 Gossypium hirsutum HOM05D003052 ORTHO05D003434 2.6e-36 156.0 134 60.4
Migut.I00927 Erythranthe guttata HOM05D003052 ORTHO05D003434 5.8e-36 154.8 134 62.7
Lalb_Chr14g0373131 Lupinus albus HOM05D003052 ORTHO05D003434 2.2e-35 152.9 126 62.7
MBI04_g02614_MAGBIO Magnolia biondii HOM05D003052 ORTHO05D003434 4.9e-35 151.8 130 62.3
Lj9A510T88 Lonicera japonica HOM05D003052 ORTHO05D003434 8.4e-35 151.0 127 64.6
THA.LOC104817971 Tarenaya hassleriana HOM05D003052 ORTHO05D003434 1.1e-34 150.6 136 59.6
Aqoxy7G01502 Aquilegia oxysepala HOM05D003052 ORTHO05D003434 1.4e-34 150.2 129 62.8
Glyma.15G018000 Glycine max HOM05D003052 ORTHO05D003434 1.9e-34 149.8 129 59.7
PGR102G1674 Punica granatum HOM05D003052 ORTHO05D003434 1.9e-34 149.8 143 60.8
CsaV3_7G033530 Cucumis sativus L. HOM05D003052 ORTHO05D003434 3.2e-34 149.1 131 58.8
Medtr2g101380 Medicago truncatula HOM05D003052 ORTHO05D003434 3.2e-34 149.1 111 65.8
Cpa.g.sc48.142 Carica papaya HOM05D003052 ORTHO05D003434 4.2e-34 148.7 135 58.5
Nitab4.5_0002520g0040 Nicotiana tabacum HOM05D003052 ORTHO05D003434 4.2e-34 148.7 124 63.7
Sed0003664 Sechium edule HOM05D003052 ORTHO05D003434 4.2e-34 148.7 131 58.8
FAN05G3438 Fragaria x ananassa HOM05D003052 ORTHO05D003434 7.1e-34 147.9 134 58.2
ClCG09G001820 Citrullus lanatus HOM05D003052 ORTHO05D003434 9.3e-34 147.5 135 58.5
MELO3C024264.2 Cucumis melo HOM05D003052 ORTHO05D003434 9.3e-34 147.5 131 58.8
HanXRQChr09g0275971 Helianthus annuus HOM05D003052 ORTHO05D003434 9.3e-34 147.5 132 59.1
Lsat_1_v5_gn_4_101160 Lactuca sativa HOM05D003052 ORTHO05D003434 9.3e-34 147.5 129 58.9
MSTRG.11041 Avicennia marina HOM05D003052 ORTHO05D003434 1.2e-33 147.1 133 60.9
FAN14G2886 Fragaria x ananassa HOM05D003052 ORTHO05D003434 1.2e-33 147.1 132 58.3
FvH4_6g31980 Fragaria vesca HOM05D003052 ORTHO05D003434 1.6e-33 146.7 132 58.3
Prupe.3G063600 Prunus persica HOM05D003052 ORTHO05D003434 1.6e-33 146.7 134 64.2
vmacro18873 Vaccinium macrocarpon HOM05D003052 ORTHO05D003434 1.6e-33 146.7 133 62.4
CANSAT56G2298 Cannabis sativa HOM05D003052 ORTHO05D003434 2.1e-33 146.4 131 61.1
RcHm_v2.0_Chr2g0139561 Rosa chinensis HOM05D003052 ORTHO05D003434 2.7e-33 146.0 132 57.6
Carub.0003s1600 Capsella rubella HOM05D003052 ORTHO05D003434 4.6e-33 145.2 140 58.6
Lj3g0018342 Lotus japonicus HOM05D003052 ORTHO05D003434 4.6e-33 145.2 127 61.4
PSO210G6452 Papaver somniferum HOM05D003052 ORTHO05D003434 6.0e-33 144.8 129 56.6
Glyma.13G356100 Glycine max HOM05D003052 ORTHO05D003434 7.8e-33 144.4 130 56.9
MD17G1188300 Malus domestica HOM05D003052 ORTHO05D003434 7.8e-33 144.4 133 58.6
Sabra01G0153600 Salix brachista HOM05D003052 ORTHO05D003434 7.8e-33 144.4 130 60.0
A01p37870 Brassica napus HOM05D003052 ORTHO05D003434 2.3e-32 142.9 137 56.9
BraA01t03847Z Brassica rapa HOM05D003052 ORTHO05D003434 3.0e-32 142.5 137 56.9
C05p50260 Brassica napus HOM05D003052 ORTHO05D003434 3.9e-32 142.1 137 56.2
BolC5t33777H Brassica oleracea HOM05D003052 ORTHO05D003434 3.9e-32 142.1 137 56.2
arahy.Tifrunner.gnm1.ann1.9YJ8T1 Arachis hypogaea HOM05D003052 ORTHO05D003434 5.1e-32 141.7 138 52.9
BcaC05g28902 Brassica carinata HOM05D003052 ORTHO05D003434 5.1e-32 141.7 137 56.2
Ca_01150_v3 Cicer arietinum L. HOM05D003052 ORTHO05D003434 5.1e-32 141.7 129 56.6
PSO210G2356 Papaver somniferum HOM05D003052 ORTHO05D003434 5.1e-32 141.7 132 56.8
TPR.G37231 Trifolium pratense HOM05D003052 ORTHO05D003434 5.1e-32 141.7 130 58.5
AL3G28950 Arabidopsis lyrata HOM05D003052 ORTHO05D003434 6.6e-32 141.4 139 58.3
C01p47980 Brassica napus HOM05D003052 ORTHO05D003434 6.6e-32 141.4 137 56.9
BcaB06g25714 Brassica carinata HOM05D003052 ORTHO05D003434 8.7e-32 141.0 140 57.1
VMungo1080G0218 Vigna mungo HOM05D003052 ORTHO05D003434 8.7e-32 141.0 137 56.2
CARHR091450 Cardamine hirsuta HOM05D003052 ORTHO05D003434 1.1e-31 140.6 141 55.3
Peaxi162Scf00818g00215 Petunia axillaris HOM05D003052 ORTHO05D003434 1.1e-31 140.6 133 57.1
Sp3g14620 Schrenkiella parvula HOM05D003052 ORTHO05D003434 1.1e-31 140.6 140 56.4
Psat1g005360 Pisum sativum HOM05D003052 ORTHO05D003434 1.5e-31 140.2 89 74.2
A05p33270 Brassica napus HOM05D003052 ORTHO05D003434 1.9e-31 139.8 142 56.3
CSS0036270 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 1.9e-31 139.8 69 88.4
Nn3g18157 Nelumbo nucifera HOM05D003052 ORTHO05D003434 1.9e-31 139.8 134 60.4
EL10Ac9g22045 Beta vulgaris HOM05D003052 ORTHO05D003434 2.5e-31 139.4 128 57.8
MD09G1207300 Malus domestica HOM05D003052 ORTHO05D003434 2.5e-31 139.4 133 56.4
Phvul.005G170200 Phaseolus vulgaris HOM05D003052 ORTHO05D003434 3.3e-31 139.0 135 54.1
ATR0315G167 Amborella trichopoda HOM05D003052 ORTHO05D003434 4.3e-31 138.7 131 55.7
CSS0019502 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 4.3e-31 138.7 69 88.4
Thhalv10021523m.g Eutrema salsugineum HOM05D003052 ORTHO05D003434 4.3e-31 138.7 140 55.0
BraA05t22152Z Brassica rapa HOM05D003052 ORTHO05D003434 7.3e-31 137.9 142 55.6
BcaC09g48595 Brassica carinata HOM05D003052 ORTHO05D003434 9.6e-31 137.5 136 52.9
BolC1t04771H Brassica oleracea HOM05D003052 ORTHO05D003434 9.6e-31 137.5 136 52.9
FAN02G4426 Fragaria x ananassa HOM05D003052 ORTHO05D003434 2.1e-30 136.3 91 71.4
ECA232G3797 Erigeron canadensis HOM05D003052 ORTHO05D003434 2.8e-30 136.0 77 80.5
AT3G16250 Arabidopsis thaliana HOM05D003052 ORTHO05D003434 3.6e-30 135.6 136 55.9
arahy.Tifrunner.gnm1.ann1.Y0KW7U Arachis hypogaea HOM05D003052 ORTHO05D003434 3.6e-30 135.6 138 51.4
Solyc08g083360.3 Solanum lycopersicum HOM05D003052 ORTHO05D003434 1.4e-29 133.7 92 70.7
Sopen08g031570 Solanum pennellii HOM05D000002 ORTHO05D000047 1.4e-29 133.7 92 70.7
Sopen10g024690 Solanum pennellii HOM05D003052 ORTHO05D003434 1.4e-29 133.7 92 70.7
PGSC0003DMG400012224 Solanum tuberosum HOM05D003052 ORTHO05D003434 4.0e-29 132.1 118 57.6
AUR62022164 Chenopodium quinoa HOM05D003052 ORTHO05D003434 2.6e-28 129.4 135 52.6
AUR62031872 Chenopodium quinoa HOM05D003052 ORTHO05D003434 1.7e-27 126.7 133 54.1
CSS0034447 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 2.2e-27 126.3 80 73.8
Aa31LG8G3400 Aethionema arabicum HOM05D003052 ORTHO05D003434 3.2e-26 122.5 147 50.3
CAN.G479.23 Capsicum annuum HOM05D003052 ORTHO05D003434 3.2e-26 122.5 64 84.4
Os07g0489800 Oryza sativa ssp. japonica HOM05D003052 ORTHO05D003434 5.4e-26 121.7 79 69.6
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 7.1e-26 121.3 106 56.6
Gohir.A10G067200 Gossypium hirsutum HOM05D003052 ORTHO05D003434 9.3e-26 120.9 114 57.9
Zm00001eb321670 Zea mays HOM05D003052 ORTHO05D003434 4.6e-25 118.6 74 73.0
CDE05G0809 Ceratophyllum demersum HOM05D003052 ORTHO05D003434 2.3e-24 116.3 140 49.3
Cc04_g02820 Coffea canephora HOM05D003052 ORTHO05D003434 5.6e-23 111.7 134 50.0
Nitab4.5_0008664g0020 Nicotiana tabacum HOM05D003052 ORTHO05D003434 6.2e-22 108.2 101 59.4
Ah.01g021790 Amaranthus hybridus HOM05D003052 ORTHO05D003434 1.4e-21 107.1 59 78.0
Zm00001eb105200 Zea mays HOM05D003052 ORTHO05D003434 4.9e-19 98.6 55 74.5
CDE05G0791 Ceratophyllum demersum HOM05D003052 ORTHO05D003434 1.9e-18 96.7 64 68.8
CSS0049965 Camellia sinensis var. sinensis HOM05D003052 ORTHO05D003434 2.9e-11 72.8 99 39.4
Oeu045183.1 Olea europaea HOM05D003052 ORTHO05D003434 2.9e-11 72.8 122 37.7
PGR044G0983 Punica granatum HOM05D003052 ORTHO05D003434 2.9e-11 72.8 92 41.3
Rhsim02G0188300 Rhododendron simsii HOM05D003052 ORTHO05D003434 2.9e-11 72.8 98 38.8
THA.LOC104803819 Tarenaya hassleriana HOM05D003052 ORTHO05D003434 3.8e-11 72.4 120 38.3
Duzib168G2319 Durio zibethinus HOM05D003052 ORTHO05D003434 4.2e-10 68.9 127 36.2
Hund31144 Selenicereus undatus HOM05D003052 ORTHO05D003434 4.2e-10 68.9 72 47.2
Hund31145 Selenicereus undatus HOM05D003052 ORTHO05D003434 4.2e-10 68.9 72 47.2
CDE07G1319 Ceratophyllum demersum HOM05D003052 ORTHO05D003434 5.5e-10 68.6 176 29.5
Cc08_g08040 Coffea canephora HOM05D003052 ORTHO05D003434 7.1e-10 68.2 111 40.5
BcaC09g52049 Brassica carinata HOM05D003052 ORTHO05D003434 9.3e-10 67.8 123 35.0
PSO782G1491 Papaver somniferum HOM05D003052 ORTHO05D003434 9.3e-10 67.8 107 35.5
Glyma.17G205000 Glycine max HOM05D003052 ORTHO05D003434 1.6e-09 67.0 73 45.2
CiPaw.08G015100 Carya illinoinensis HOM05D003052 ORTHO05D003434 2.1e-09 66.6 119 37.0
Nn8g39302 Nelumbo nucifera HOM05D003052 ORTHO05D003434 2.1e-09 66.6 105 36.2
Gorai.013G238500 Gossypium raimondii HOM05D003052 ORTHO05D003434 3.5e-09 65.9 115 38.3
QL12p031408 Quercus lobata HOM05D003052 ORTHO05D003434 4.6e-09 65.5 69 44.9
Thecc.09G145000 Theobroma cacao HOM05D003052 ORTHO05D003434 6.1e-09 65.1 80 42.5
Peaxi162Scf00632g00419 Petunia axillaris HOM05D003052 ORTHO05D003434 7.9e-09 64.7 116 35.3
ClCG08G012930 Citrullus lanatus HOM05D003052 ORTHO05D003434 1.3e-08 63.9 110 37.3
TWI34G0683 Tripterygium wilfordii HOM05D003052 ORTHO05D003434 1.3e-08 63.9 127 35.4
Os05g0555300 Oryza sativa ssp. japonica HOM05D003052 ORTHO05D003434 1.8e-08 63.5 97 35.1
ECA233G5297 Erigeron canadensis HOM05D000128 ORTHO05D000059 3.0e-08 62.8 82 39.0
Gohir.D13G209400 Gossypium hirsutum HOM05D003052 ORTHO05D003434 6.7e-08 61.6 115 37.4
AUR62032371 Chenopodium quinoa HOM05D003052 ORTHO05D003434 8.7e-08 61.2 100 40.0
Lalb_Chr24g0402301 Lupinus albus HOM05D003052 ORTHO05D003434 1.1e-07 60.8 74 40.5
unitig_578.g16602 Utricularia gibba HOM05D003052 ORTHO05D003434 1.5e-07 60.5 44 65.9
Pp3c14_14470 Physcomitrium patens HOM05D003052 ORTHO05D003434 1.9e-07 60.1 81 35.8
MSTRG.1644 Avicennia marina HOM05D003052 ORTHO05D003434 3.3e-07 59.3 106 34.9
Cfa021483 Carpinus fangiana HOM05D003052 ORTHO05D003434 3.3e-07 59.3 67 41.8
Migut.E01491 Erythranthe guttata HOM05D003052 ORTHO05D003434 7.4e-07 58.2 78 41.0
SMO146G0398 Selaginella moellendorffii HOM05D003052 ORTHO05D003434 1.3e-06 57.4 53 49.1
SGA_v2.0_scaffold187G40270 Striga asiatica HOM05D003052 ORTHO05D003434 1.3e-06 57.4 107 34.6
TWI12G0698 Tripterygium wilfordii HOM05D003052 ORTHO05D003434 2.2e-06 56.6 130 32.3


User provided reference genes

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