Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 3.3e-150 535.0 272 100.0
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 5.8e-131 471.1 270 85.6
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.2e-130 469.2 270 87.0
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 1.9e-129 466.1 255 90.2
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.9e-129 466.1 261 88.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 2.4e-129 465.7 261 87.7
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 2.4e-129 465.7 261 88.1
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.4e-129 465.7 257 88.7
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 5.5e-129 464.5 270 85.2
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 7.1e-129 464.2 255 89.4
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 9.3e-129 463.8 258 87.6
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.2e-128 463.4 260 86.9
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 2.1e-128 462.6 246 92.7
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 2.1e-128 462.6 254 89.8
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.5e-128 461.8 263 85.9
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 4.6e-128 461.5 274 84.3
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 7.9e-128 460.7 263 86.3
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 7.9e-128 460.7 258 87.2
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 7.9e-128 460.7 254 89.0
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 7.9e-128 460.7 258 86.4
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 1.0e-127 460.3 270 84.8
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 1.0e-127 460.3 254 90.9
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.3e-127 459.9 255 89.4
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.8e-127 459.5 266 85.3
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.8e-127 459.5 267 86.1
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.8e-127 459.5 266 84.6
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 2.3e-127 459.1 255 89.0
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 2.3e-127 459.1 254 88.2
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 3.0e-127 458.8 265 85.3
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 3.9e-127 458.4 258 87.6
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 6.7e-127 457.6 262 87.8
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 8.7e-127 457.2 258 88.0
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 8.7e-127 457.2 267 84.6
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 8.7e-127 457.2 261 85.8
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 1.9e-126 456.1 257 87.5
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 7.4e-126 454.1 243 91.8
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 7.4e-126 454.1 258 86.4
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 2.1e-125 452.6 252 87.7
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 3.7e-125 451.8 258 85.3
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 4.8e-125 451.4 266 83.5
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.1e-124 450.3 260 85.4
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 1.1e-124 450.3 314 75.8
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.1e-124 450.3 254 87.8
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 2.4e-124 449.1 258 85.3
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 9.0e-124 447.2 261 84.3
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 2.0e-123 446.0 263 85.2
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 3.4e-123 445.3 258 84.9
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.8e-123 444.5 258 84.5
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 1.7e-122 443.0 258 84.9
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 3.8e-122 441.8 242 90.9
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.4e-122 440.7 258 84.1
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.9e-121 439.5 260 84.6
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 1.9e-121 439.5 258 83.7
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 5.5e-121 438.0 265 80.8
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 9.3e-121 437.2 257 83.7
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.6e-120 436.4 246 87.8
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.6e-120 436.4 267 80.5
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 4.6e-120 434.9 258 82.9
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.0e-119 433.7 256 83.2
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 2.3e-119 432.6 294 76.2
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 3.0e-119 432.2 260 81.9
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 5.1e-119 431.4 245 84.5
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.1e-119 431.4 245 85.7
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 6.7e-119 431.0 260 81.9
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 8.7e-119 430.6 255 82.7
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.1e-118 430.3 268 79.5
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 3.3e-118 428.7 272 79.0
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 7.4e-118 427.6 254 82.3
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 1.3e-117 426.8 264 80.7
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 3.7e-117 425.2 265 79.6
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 4.8e-117 424.9 260 80.8
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 4.8e-117 424.9 260 80.8
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 4.8e-117 424.9 260 80.8
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 6.3e-117 424.5 252 82.5
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 8.2e-117 424.1 255 80.8
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 8.2e-117 424.1 261 80.1
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 1.1e-116 423.7 260 81.2
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.4e-116 423.3 260 81.2
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 1.8e-116 422.9 258 81.0
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 1.8e-116 422.9 255 80.8
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.1e-116 421.8 243 82.7
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 4.1e-116 421.8 261 79.7
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.3e-116 421.4 275 81.1
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.2e-115 420.2 253 79.8
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.5e-115 419.9 266 77.1
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.5e-115 419.9 266 77.1
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.5e-115 419.9 266 77.1
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 1.5e-115 419.9 269 77.3
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 2.0e-115 419.5 255 80.0
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 2.0e-115 419.5 255 80.0
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 2.0e-115 419.5 269 77.3
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 2.6e-115 419.1 254 81.9
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 5.9e-115 417.9 258 80.2
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 7.6e-115 417.5 258 78.3
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 2.9e-114 415.6 254 80.7
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.9e-113 412.9 277 75.1
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 2.1e-112 409.5 248 79.8
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 2.3e-111 406.0 267 76.0
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.5e-110 403.3 270 75.2
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.3e-109 400.2 270 77.4
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 2.2e-109 399.4 258 79.8
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 2.4e-108 396.0 268 73.9
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 6.9e-108 394.4 264 75.0
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.9e-108 394.4 264 75.0
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.3e-106 390.2 269 73.6
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.9e-105 386.3 269 72.9
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.2e-105 385.6 267 73.4
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 4.6e-104 381.7 233 81.5
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 8.8e-103 377.5 243 76.1
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 6.3e-101 371.3 266 73.7
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.4e-100 370.2 255 74.1
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.7e-98 363.2 233 77.3
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 9.1e-92 340.9 252 64.3
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 1.2e-91 340.5 279 60.9
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.6e-91 340.1 271 61.3
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 2.6e-91 339.3 245 63.3
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.0e-90 337.4 253 71.1
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 9.4e-89 330.9 174 90.8
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.6e-88 330.1 270 66.3
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 2.7e-88 329.3 272 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 4.7e-88 328.6 245 62.9
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.7e-88 328.6 174 90.8
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 2.0e-86 323.2 275 59.6
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-80 303.9 218 77.1
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.7e-74 283.5 149 91.3
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.8e-71 271.2 166 83.1
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.3e-69 267.3 242 59.9
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 7.0e-68 261.5 266 47.0
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 3.3e-65 252.7 267 47.6
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.8e-63 246.9 185 70.8
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 7.5e-54 214.9 225 47.1
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.6e-51 205.7 159 67.3
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.5e-46 190.7 112 83.0
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.3e-37 161.0 264 36.7
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.1e-36 155.2 94 79.8
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 1.6e-35 154.1 352 31.8
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.1e-35 153.7 94 78.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.1e-35 153.7 94 78.7
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 5.6e-33 145.6 114 71.1
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.2e-32 144.4 95 80.0
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.6e-32 142.9 78 88.5
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.6e-30 135.2 172 47.1
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.2e-19 101.3 80 66.2
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 6.7e-18 95.5 53 86.8
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 3.3e-17 93.2 55 78.2
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.2e-14 84.7 48 83.3
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.2e-14 84.7 48 83.3
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.3e-09 66.2 47 63.8
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.6e-09 65.1 85 44.7
Actinidia16176 Actinidia chinensis HOM05D004753 ORTHO05D005920 9.0e-07 58.5 53 58.5
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.8e-06 55.8 30 83.3
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.8e-06 55.8 30 83.3
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.8e-06 55.8 30 83.3
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.8e-06 55.8 30 83.3
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.8e-06 55.8 30 83.3


User provided reference genes

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