Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 8.1e-202 706.8 348 100.0
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 5.6e-171 604.4 347 86.5
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.0e-148 530.4 360 73.3
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 5.7e-147 524.6 352 74.4
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 3.6e-141 505.4 345 72.5
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 1.0e-140 503.8 352 72.2
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 1.2e-136 490.3 346 71.4
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 6.7e-132 474.6 347 68.6
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 3.3e-131 472.2 345 68.1
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 2.2e-130 469.5 413 61.0
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.2e-128 463.8 351 65.2
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 1.6e-128 463.4 297 74.1
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 2.0e-128 463.0 344 66.9
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 6.5e-127 458.0 346 66.5
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 6.5e-127 458.0 345 66.7
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 3.2e-126 455.7 357 66.4
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 4.2e-126 455.3 356 65.4
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 1.6e-125 453.4 345 66.4
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 2.1e-125 453.0 345 66.1
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 2.1e-125 453.0 351 63.8
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 6.1e-125 451.4 373 64.3
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 5.7e-123 444.9 345 65.5
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 9.8e-123 444.1 367 63.2
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 2.2e-122 443.0 349 64.8
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 4.8e-122 441.8 357 62.7
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 6.3e-122 441.4 342 66.7
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 8.3e-122 441.0 345 65.2
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 1.1e-121 440.7 349 64.8
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.4e-121 440.3 349 64.8
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 5.4e-121 438.3 341 63.9
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.6e-120 436.8 341 65.1
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 7.7e-120 434.5 341 65.1
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 1.7e-119 433.3 346 66.8
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 1.7e-119 433.3 341 63.3
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 3.8e-119 432.2 327 68.2
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 1.9e-118 429.9 342 66.4
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 1.9e-118 429.9 313 69.0
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 1.0e-116 424.1 284 72.9
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 1.0e-116 424.1 319 65.8
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 4.0e-116 422.2 340 63.5
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 4.0e-116 422.2 336 64.3
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 4.0e-116 422.2 340 63.2
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 4.0e-116 422.2 326 65.3
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 6.8e-116 421.4 347 63.7
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 1.2e-115 420.6 326 65.3
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 1.5e-115 420.2 329 63.8
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.0e-115 419.9 351 61.8
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 2.6e-115 419.5 340 62.9
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 1.3e-114 417.2 386 55.7
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 1.7e-114 416.8 284 71.8
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 2.8e-114 416.0 320 64.4
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 4.9e-114 415.2 284 70.8
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 6.3e-114 414.8 284 71.1
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 6.3e-114 414.8 301 69.1
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 1.1e-113 414.1 364 60.4
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 3.1e-113 412.5 347 62.8
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 5.4e-113 411.8 346 63.3
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 2.0e-112 409.8 284 70.8
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 2.7e-112 409.5 342 62.3
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 2.7e-112 409.5 342 62.3
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 3.5e-112 409.1 346 61.6
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 3.5e-112 409.1 288 70.5
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 5.0e-111 405.2 349 61.3
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 6.6e-111 404.8 327 63.3
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 6.6e-111 404.8 284 69.7
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 6.6e-111 404.8 354 59.9
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 8.6e-111 404.4 292 66.4
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 4.7e-109 398.7 284 68.0
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 1.8e-108 396.7 368 56.8
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 5.2e-108 395.2 320 64.7
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 8.9e-108 394.4 345 59.7
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 8.9e-108 394.4 327 60.6
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 3.4e-107 392.5 342 60.8
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 4.4e-107 392.1 348 61.5
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.7e-106 390.2 297 67.3
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 4.1e-105 385.6 322 60.9
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 3.5e-104 382.5 289 63.7
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 1.0e-103 380.9 348 55.2
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 5.6e-102 375.2 367 55.6
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 1.0e-100 370.9 318 61.0
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 8.9e-100 367.9 250 70.4
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 2.0e-99 366.7 259 69.1
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 2.0e-99 366.7 273 67.0
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 1.2e-96 357.5 356 57.6
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 2.0e-96 356.7 284 64.8
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 6.2e-93 345.1 331 54.7
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 5.4e-89 332.0 330 52.4
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.8e-84 317.0 308 55.8
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 2.6e-83 313.2 287 57.5
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 2.6e-83 313.2 321 54.5
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.4e-83 312.8 270 59.6
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 4.4e-83 312.4 202 71.3
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 2.1e-72 276.9 261 55.2
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 4.8e-69 265.8 297 45.1
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 6.2e-69 265.4 313 45.4
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 4.8e-61 239.2 321 44.9
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 5.3e-60 235.7 311 42.8
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 4.2e-57 226.1 215 57.7
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 7.1e-57 225.3 146 70.5
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 3.3e-54 216.5 154 64.9
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 4.0e-52 209.5 233 46.4
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 4.5e-51 206.1 136 69.1
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 6.9e-44 182.2 279 38.0
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 3.0e-39 166.8 366 33.1
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 8.2e-37 158.7 299 36.5
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.1e-33 148.3 162 49.4
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 2.1e-32 144.1 143 51.0
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 7.2e-25 119.0 89 61.8
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 1.7e-21 107.8 67 73.1
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 3.7e-21 106.7 99 51.5
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.3e-15 87.4 61 68.9
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.3e-15 87.4 61 68.9
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 3.7e-13 80.1 150 34.7
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.9e-09 67.8 163 35.0
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 7.2e-09 65.9 192 31.8
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 7.2e-09 65.9 192 31.8
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 2.1e-08 64.3 192 31.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 2.7e-08 63.9 185 31.9
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 2.7e-08 63.9 187 31.0
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 6.1e-08 62.8 156 34.6
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 8.0e-08 62.4 187 31.6
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 8.0e-08 62.4 180 31.1
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 8.0e-08 62.4 178 32.6
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.0e-07 62.0 187 29.9
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.0e-07 62.0 180 31.1
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.4e-07 61.6 179 32.4
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.4e-07 61.6 183 31.1
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.4e-07 61.6 186 31.7
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 1.4e-07 61.6 187 30.5
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 1.4e-07 61.6 188 31.4
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 1.8e-07 61.2 188 31.4
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 2.3e-07 60.8 186 31.7
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.3e-07 60.8 195 27.2
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 4.0e-07 60.1 186 30.1
SalBow8G1474 Salvia bowleyana HOM05D000221 ORTHO05D359434 5.2e-07 59.7 58 48.3
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 5.2e-07 59.7 187 30.5
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 6.8e-07 59.3 170 32.4
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 6.8e-07 59.3 177 31.1
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 6.8e-07 59.3 179 32.4
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 8.8e-07 58.9 192 27.6
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 8.8e-07 58.9 182 30.8
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 8.8e-07 58.9 179 31.3
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.5e-06 58.2 195 28.2
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.5e-06 58.2 180 31.7
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.5e-06 58.2 192 28.6
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 2.6e-06 57.4 192 28.1
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 2.6e-06 57.4 170 28.8
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 4.4e-06 56.6 185 29.7
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 4.4e-06 56.6 170 28.8
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 7.5e-06 55.8 131 34.4
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 9.8e-06 55.5 192 28.1
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 9.8e-06 55.5 192 28.1
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 9.8e-06 55.5 151 27.2


User provided reference genes

Program Settings