Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36589 Davidia involucrata HOM05D004028 ORTHO05D004844 9.0e-156 553.5 273 100.0
Hma1.2p1_0018F.1_g013000 Hydrangea macrophylla HOM05D004028 ORTHO05D004844 2.0e-70 270.0 332 45.2
Cc09_g08350 Coffea canephora HOM05D004028 ORTHO05D004844 5.8e-46 188.7 336 36.0
Ciclev10010305m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.0e-42 177.9 321 34.3
Sc05g0000340 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.9e-41 173.7 311 33.4
PSO170G5200 Papaver somniferum HOM05D004028 ORTHO05D004844 5.6e-41 172.2 352 30.1
COL.COLO4_34968 Corchorus olitorius HOM05D004028 ORTHO05D004844 4.8e-40 169.1 342 33.6
Lsat_1_v5_gn_8_94080 Lactuca sativa HOM05D004028 ORTHO05D004844 3.1e-39 166.4 330 33.9
PSO017G1888 Papaver somniferum HOM05D004028 ORTHO05D004844 3.1e-39 166.4 352 29.5
Nn8g39324 Nelumbo nucifera HOM05D004028 ORTHO05D004844 2.9e-37 159.8 345 29.6
AUR62022234 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.4e-36 157.5 332 30.7
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 4.2e-36 156.0 347 30.0
Gorai.001G002900 Gossypium raimondii HOM05D004028 ORTHO05D004844 4.2e-36 156.0 343 32.1
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 9.3e-36 154.8 288 35.8
Aqoxy7G01945 Aquilegia oxysepala HOM05D004028 ORTHO05D004844 2.1e-35 153.7 340 28.2
HanXRQChr14g0455571 Helianthus annuus HOM05D004028 ORTHO05D004844 2.7e-35 153.3 331 30.8
Gohir.D07G002950 Gossypium hirsutum HOM05D004028 ORTHO05D004844 3.5e-35 152.9 343 31.8
Gorai.001G003000 Gossypium raimondii HOM05D004028 ORTHO05D004844 3.5e-35 152.9 343 31.8
Potri.006G187000 Populus trichocarpa HOM05D004028 ORTHO05D004844 6.0e-35 152.1 327 33.0
Thecc.09G118100 Theobroma cacao HOM05D004028 ORTHO05D004844 3.0e-34 149.8 217 43.3
TAR636G0621 Trochodendron aralioides HOM05D004028 ORTHO05D004844 3.9e-34 149.4 349 28.9
ECA236G2741 Erigeron canadensis HOM05D004028 ORTHO05D004844 5.1e-34 149.1 331 30.2
COL.COLO4_34966 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.1e-33 147.9 340 32.1
Gohir.D07G003000 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.1e-33 147.9 343 31.2
Rhsim08G0217900 Rhododendron simsii HOM05D000103 ORTHO05D000049 7.3e-33 145.2 337 28.2
CiPaw.01G242300 Carya illinoinensis HOM05D004028 ORTHO05D004844 1.6e-32 144.1 337 27.0
COL.COLO4_34971 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.8e-32 143.3 333 33.6
COL.COLO4_34965 Corchorus olitorius HOM05D004028 ORTHO05D004844 8.1e-32 141.7 340 31.5
QL05p026783 Quercus lobata HOM05D004028 ORTHO05D004844 1.1e-31 141.4 339 27.4
CSS0044472 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 1.4e-31 141.0 336 27.1
Duzib168G0223 Durio zibethinus HOM05D004028 ORTHO05D004844 1.4e-31 141.0 261 33.7
Dinv30549 Davidia involucrata HOM05D004028 ORTHO05D004844 1.8e-31 140.6 335 26.6
arahy.Tifrunner.gnm1.ann1.09PUMV Arachis hypogaea HOM05D004028 ORTHO05D004844 3.1e-31 139.8 333 27.3
ECA236G0421 Erigeron canadensis HOM05D004028 ORTHO05D004844 3.1e-31 139.8 333 30.0
Haze_16483 Corylus avellana HOM05D004028 ORTHO05D004844 6.9e-31 138.7 338 26.6
TWI12G0252 Tripterygium wilfordii HOM05D004028 ORTHO05D004844 1.5e-30 137.5 344 27.0
Cfa002035 Carpinus fangiana HOM05D004028 ORTHO05D004844 2.6e-30 136.7 338 26.6
Nitab4.5_0000410g0330 Nicotiana tabacum HOM05D004028 ORTHO05D004844 2.6e-30 136.7 350 27.4
Oeu001148.1 Olea europaea HOM05D004028 ORTHO05D004844 2.6e-30 136.7 337 27.3
GSVIVG01017205001 Vitis vinifera HOM05D004028 ORTHO05D004844 4.5e-30 136.0 309 28.8
Lj5C65T7 Lonicera japonica HOM05D004028 ORTHO05D004844 1.3e-29 134.4 336 26.5
Peaxi162Scf00015g00059 Petunia axillaris HOM05D004028 ORTHO05D004844 1.3e-29 134.4 335 28.4
Phvul.010G152600 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 1.7e-29 134.0 332 25.0
Thecc.06G077900 Theobroma cacao HOM05D004028 ORTHO05D004844 2.9e-29 133.3 347 25.9
Atru.chr1.3171 Acer truncatum HOM05D004028 ORTHO05D004844 3.8e-29 132.9 340 25.9
Nitab4.5_0003751g0020 Nicotiana tabacum HOM05D004028 ORTHO05D004844 3.8e-29 132.9 335 27.2
Prupe.3G076900 Prunus persica HOM05D004028 ORTHO05D004844 3.8e-29 132.9 346 25.7
Solyc03g119920.1 Solanum lycopersicum HOM05D004028 ORTHO05D004844 3.8e-29 132.9 335 26.9
Sopen03g038800 Solanum pennellii HOM05D004028 ORTHO05D004844 3.8e-29 132.9 335 26.9
Ciclev10024778m.g Citrus clementina HOM05D004028 ORTHO05D004844 6.4e-29 132.1 337 26.7
Glyma.07G033400 Glycine max HOM05D004028 ORTHO05D004844 6.4e-29 132.1 333 24.6
MBI04_g43145_MAGBIO Magnolia biondii HOM05D004028 ORTHO05D004844 8.4e-29 131.7 355 26.8
PGSC0003DMG400005615 Solanum tuberosum HOM05D004028 ORTHO05D004844 8.4e-29 131.7 335 26.9
Gohir.A07G002700 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.1e-28 131.3 343 29.2
vmacro18947 Vaccinium macrocarpon HOM05D004028 ORTHO05D004844 1.4e-28 131.0 336 26.2
arahy.Tifrunner.gnm1.ann1.65GG0R Arachis hypogaea HOM05D004028 ORTHO05D004844 1.9e-28 130.6 336 28.9
arahy.Tifrunner.gnm1.ann1.B5Y4IK Arachis hypogaea HOM05D004028 ORTHO05D004844 1.9e-28 130.6 336 28.9
Dinv38074 Davidia involucrata HOM05D004028 ORTHO05D004844 2.4e-28 130.2 306 28.8
Psat4g172640 Pisum sativum HOM05D004028 ORTHO05D004844 2.4e-28 130.2 336 24.4
Glyma.08G208600 Glycine max HOM05D004028 ORTHO05D004844 4.2e-28 129.4 335 24.8
VMungo0331G0808 Vigna mungo HOM05D004028 ORTHO05D004844 4.2e-28 129.4 333 24.3
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 9.3e-28 128.3 346 28.3
Glyma.06G212100 Glycine max HOM05D004028 ORTHO05D004844 1.6e-27 127.5 335 28.4
RcHm_v2.0_Chr2g0137111 Rosa chinensis HOM05D004028 ORTHO05D004844 2.1e-27 127.1 337 25.2
COL.COLO4_12855 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.7e-27 126.7 339 24.5
MSTRG.11103 Avicennia marina HOM05D004028 ORTHO05D004844 3.5e-27 126.3 337 25.5
Duzib235G0948 Durio zibethinus HOM05D004028 ORTHO05D004844 7.9e-27 125.2 339 25.4
Lalb_Chr04g0262561 Lupinus albus HOM05D004028 ORTHO05D004844 1.3e-26 124.4 333 26.1
Lj3g0027440 Lotus japonicus HOM05D004028 ORTHO05D004844 1.8e-26 124.0 336 23.8
CAN.G438.98 Capsicum annuum HOM05D004028 ORTHO05D004844 2.3e-26 123.6 335 25.7
FAN09G1065 Fragaria x ananassa HOM05D004028 ORTHO05D004844 2.3e-26 123.6 337 24.6
Potri.001G175600 Populus trichocarpa HOM05D004028 ORTHO05D004844 3.0e-26 123.2 338 26.0
Cc09_g08320 Coffea canephora HOM05D004028 ORTHO05D004844 6.7e-26 122.1 245 32.2
FvH4_6g30720 Fragaria vesca HOM05D004028 ORTHO05D004844 6.7e-26 122.1 337 24.3
FAN14G3012 Fragaria x ananassa HOM05D004028 ORTHO05D004844 6.7e-26 122.1 337 24.3
Ca_07170_v3 Cicer arietinum L. HOM05D004028 ORTHO05D004844 1.1e-25 121.3 337 23.1
MD17G1201100 Malus domestica HOM05D004028 ORTHO05D004844 1.1e-25 121.3 345 24.6
FAN05G3865 Fragaria x ananassa HOM05D004028 ORTHO05D004844 1.9e-25 120.6 336 23.8
SalBow2G1023 Salvia bowleyana HOM05D004028 ORTHO05D004844 1.9e-25 120.6 338 27.2
Lj5C65T8 Lonicera japonica HOM05D004028 ORTHO05D004844 2.5e-25 120.2 342 27.5
Sabra01G0136900 Salix brachista HOM05D004028 ORTHO05D004844 2.5e-25 120.2 338 24.3
TAR636G0233 Trochodendron aralioides HOM05D004028 ORTHO05D004844 2.5e-25 120.2 266 31.2
PGR004G0126 Punica granatum HOM05D004028 ORTHO05D004844 4.3e-25 119.4 340 23.8
FAN02G4155 Fragaria x ananassa HOM05D004028 ORTHO05D004844 7.4e-25 118.6 337 23.4
Oeu001149.3 Olea europaea HOM05D004028 ORTHO05D004844 7.4e-25 118.6 314 27.1
MELO3C023384.2 Cucumis melo HOM05D004028 ORTHO05D004844 1.6e-24 117.5 349 25.5
Medtr4g011610 Medicago truncatula HOM05D004028 ORTHO05D004844 1.6e-24 117.5 338 22.8
HPP92_021805 Vanilla planifolia HOM05D004028 ORTHO05D004844 2.1e-24 117.1 338 25.7
ATR0083G044 Amborella trichopoda HOM05D004028 ORTHO05D004844 1.4e-23 114.4 354 22.6
ECA247G3140 Erigeron canadensis HOM05D004028 ORTHO05D004844 1.8e-23 114.0 343 24.8
DCAR_016247 Daucus carota HOM05D004028 ORTHO05D004844 4.0e-23 112.8 328 25.0
COL.COLO4_35012 Corchorus olitorius HOM05D004028 ORTHO05D004844 5.3e-23 112.5 255 33.7
Sed0005418 Sechium edule HOM05D004028 ORTHO05D004844 5.3e-23 112.5 335 26.3
Phvul.009G199800 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 6.9e-23 112.1 342 29.2
ClCG09G002500 Citrullus lanatus HOM05D004028 ORTHO05D004844 1.5e-22 110.9 323 25.7
CsaV3_7G032830 Cucumis sativus L. HOM05D004028 ORTHO05D004844 5.8e-22 109.0 349 23.5
CANSAT56G0144 Cannabis sativa HOM05D004028 ORTHO05D004844 1.3e-21 107.8 351 23.4
Carub.0001s4187 Capsella rubella HOM05D004028 ORTHO05D004844 2.2e-21 107.1 348 24.7
CDE01G0290 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 2.2e-21 107.1 341 23.5
Ciclev10010748m.g Citrus clementina HOM05D004028 ORTHO05D004844 3.8e-21 106.3 291 28.2
Manes.04G119500 Manihot esculenta HOM05D004028 ORTHO05D004844 8.4e-21 105.1 337 23.1
Sc12g0009060 Simmondsia chinensis HOM05D004028 ORTHO05D004844 2.5e-20 103.6 344 24.4
Sed0020445 Sechium edule HOM05D004028 ORTHO05D004844 3.2e-20 103.2 321 24.6
Gohir.A10G078100 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.6e-19 100.9 164 31.1
Peaxi162Scf00034g00112 Petunia axillaris HOM05D004028 ORTHO05D004844 1.6e-19 100.9 337 26.7
Eucgr.J03026 Eucalyptus grandis HOM05D004028 ORTHO05D004844 4.6e-19 99.4 158 28.5
Gorai.011G079300 Gossypium raimondii HOM05D004028 ORTHO05D004844 6.0e-19 99.0 164 30.5
HanXRQChr04g0096371 Helianthus annuus HOM05D004028 ORTHO05D004844 1.3e-18 97.8 329 22.8
Aa31LG10G2260 Aethionema arabicum HOM05D004028 ORTHO05D004844 2.3e-18 97.1 358 25.1
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 2.3e-18 97.1 335 25.4
SEGI_28548 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 2.3e-18 97.1 335 25.4
AUR62016410 Chenopodium quinoa HOM05D004028 ORTHO05D004844 3.0e-18 96.7 346 22.3
Gohir.D10G073400 Gossypium hirsutum HOM05D004028 ORTHO05D004844 3.0e-18 96.7 164 29.9
CDE02G1484 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 3.9e-18 96.3 301 24.9
AL1G61100 Arabidopsis lyrata HOM05D004028 ORTHO05D004844 5.1e-18 95.9 172 30.8
AT1G52780 Arabidopsis thaliana HOM05D004028 ORTHO05D004844 5.1e-18 95.9 173 30.1
BcaC08g43459 Brassica carinata HOM05D004028 ORTHO05D004844 5.1e-18 95.9 340 25.3
C06p08330 Brassica napus HOM05D004028 ORTHO05D004844 5.1e-18 95.9 340 25.3
TPR.G38588 Trifolium pratense HOM05D004028 ORTHO05D004844 6.7e-18 95.5 159 28.3
Zm00001eb122530 Zea mays HOM05D004028 ORTHO05D004844 1.9e-17 94.0 166 30.1
CARHR042960 Cardamine hirsuta HOM05D004028 ORTHO05D004844 7.4e-17 92.0 169 28.4
AUR62031947 Chenopodium quinoa HOM05D004028 ORTHO05D004844 9.6e-17 91.7 131 39.7
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 1.3e-16 91.3 297 21.9
AUR62016304 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.3e-16 91.3 296 21.6
AUR62011595 Chenopodium quinoa HOM05D004028 ORTHO05D004844 3.7e-16 89.7 345 21.2
Thhalv10011203m.g Eutrema salsugineum HOM05D004028 ORTHO05D004844 4.8e-16 89.4 170 28.8
Cpa.g.sc10.197 Carica papaya HOM05D004028 ORTHO05D004844 1.5e-14 84.3 419 22.2
Sp1g39350 Schrenkiella parvula HOM05D004028 ORTHO05D004844 1.5e-14 84.3 170 27.1
CSS0013629 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 5.8e-14 82.4 231 30.7
Migut.I00818 Erythranthe guttata HOM05D004028 ORTHO05D004844 5.8e-14 82.4 152 32.2
Sopen12g022140 Solanum pennellii HOM05D004028 ORTHO05D004844 1.7e-13 80.9 361 26.0
Ciclev10010489m.g Citrus clementina HOM05D004028 ORTHO05D004844 8.4e-13 78.6 96 42.7
Ah.01g021130 Amaranthus hybridus HOM05D004028 ORTHO05D004844 4.2e-12 76.3 153 24.8
Os01g0176800 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 7.1e-12 75.5 170 29.4
EL10Ac9g21967 Beta vulgaris HOM05D004028 ORTHO05D004844 9.3e-12 75.1 159 23.9
Sc12g0009040 Simmondsia chinensis HOM05D004028 ORTHO05D004844 9.3e-12 75.1 159 26.4
DCAR_021324 Daucus carota HOM05D004028 ORTHO05D004844 2.3e-10 70.5 93 45.2
Lsat_1_v5_gn_1_33841 Lactuca sativa HOM05D004028 ORTHO05D004844 3.0e-10 70.1 98 40.8
COL.COLO4_34970 Corchorus olitorius HOM05D004028 ORTHO05D004844 8.7e-10 68.6 46 63.0
Sabra06G0142000 Salix brachista HOM05D004028 ORTHO05D004844 1.1e-09 68.2 46 56.5
PGSC0003DMG400028640 Solanum tuberosum HOM05D004028 ORTHO05D004844 1.9e-09 67.4 155 31.0
BcaB07g33394 Brassica carinata HOM05D004028 ORTHO05D004844 2.5e-09 67.0 168 26.8
AUR62031946 Chenopodium quinoa HOM05D004028 ORTHO05D004844 2.5e-09 67.0 76 40.8
TPR.G40708 Trifolium pratense HOM05D004028 ORTHO05D004844 8.2e-08 62.0 97 32.0
Dinv38073 Davidia involucrata HOM05D004028 ORTHO05D004844 3.1e-07 60.1 51 56.9
Lsat_1_v5_gn_1_33920 Lactuca sativa HOM05D004028 ORTHO05D004844 7.7e-06 55.5 51 51.0


User provided reference genes

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