Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-147 526.6 267 100.0
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.2e-114 416.0 260 84.6
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.1e-105 387.1 260 78.1
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 9.2e-105 384.0 260 77.3
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.4e-99 365.2 254 71.7
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 5.6e-94 348.2 255 69.8
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 5.2e-92 341.7 255 67.8
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 9.9e-91 337.4 261 66.7
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.7e-90 336.7 260 67.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.2e-90 336.3 255 66.7
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.9e-89 333.2 256 64.8
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 4.6e-88 328.6 259 65.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 6.0e-88 328.2 255 65.1
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 7.8e-88 327.8 256 65.6
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 2.3e-87 326.2 258 64.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.3e-87 326.2 249 65.1
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.9e-87 325.5 260 63.8
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 6.6e-87 324.7 255 64.7
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 8.6e-87 324.3 256 64.1
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.1e-86 323.9 264 63.6
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.1e-86 323.9 233 71.2
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 2.5e-86 322.8 256 63.7
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 3.3e-86 322.4 252 64.3
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 5.6e-86 321.6 252 67.5
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.6e-86 320.9 254 64.2
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.2e-85 320.5 266 63.2
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.2e-85 320.5 295 58.6
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 3.1e-84 315.8 253 66.0
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 4.0e-84 315.5 251 63.7
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 6.8e-84 314.7 252 64.3
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.5e-83 313.5 249 63.1
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.5e-83 313.5 261 60.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.5e-83 313.5 251 62.5
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.4e-83 312.4 252 63.1
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 7.6e-83 311.2 252 61.9
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.9e-82 309.3 249 63.9
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 3.8e-82 308.9 252 62.7
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.9e-82 308.5 266 60.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 8.4e-82 307.8 256 60.5
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 8.4e-82 307.8 252 62.7
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-81 307.4 252 63.1
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 7.1e-81 304.7 254 61.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 7.1e-81 304.7 252 62.3
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.1e-81 304.7 398 46.2
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.2e-80 303.9 251 61.8
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.6e-80 303.5 257 61.1
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 2.1e-80 303.1 258 59.3
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 3.5e-80 302.4 249 60.6
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.3e-79 300.4 252 61.1
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.3e-79 299.7 249 61.0
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 2.3e-79 299.7 251 61.4
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.6e-79 298.1 249 60.6
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 8.7e-79 297.7 251 61.0
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.1e-78 297.4 251 60.6
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 2.5e-78 296.2 252 60.7
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 4.3e-78 295.4 251 60.6
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 1.6e-77 293.5 265 57.7
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.8e-77 292.7 253 60.5
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 3.6e-77 292.4 251 59.4
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.8e-77 292.0 255 61.2
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 6.2e-77 291.6 253 60.1
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.1e-77 291.2 257 58.0
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.4e-76 290.4 257 58.0
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.8e-76 290.0 257 57.6
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.8e-76 290.0 257 59.5
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 4.4e-75 285.4 249 59.4
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.9e-74 282.7 258 55.4
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.9e-73 280.0 229 61.6
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 3.5e-72 275.8 232 59.5
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 4.6e-72 275.4 307 49.5
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 4.6e-72 275.4 245 58.0
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.7e-71 273.5 256 56.6
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.0e-71 272.7 236 59.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.6e-69 265.8 250 51.6
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 4.8e-69 265.4 250 52.4
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 8.1e-69 264.6 237 58.6
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.0e-68 262.3 250 53.6
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 5.3e-68 261.9 252 50.4
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 5.3e-68 261.9 234 60.3
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.5e-67 260.4 252 53.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.4e-67 259.2 272 48.9
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.4e-67 259.2 259 51.0
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 7.6e-67 258.1 256 51.2
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.6e-67 258.1 259 51.0
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 9.9e-67 257.7 181 72.9
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 9.9e-67 257.7 311 46.6
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.3e-66 257.3 255 50.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 2.9e-66 256.1 255 50.6
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.9e-66 256.1 213 63.4
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.9e-66 255.4 269 48.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 8.4e-66 254.6 255 50.6
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.1e-65 254.2 255 50.6
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 2.4e-65 253.1 255 49.8
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 3.2e-65 252.7 230 57.8
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 5.5e-65 251.9 255 48.2
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 9.3e-65 251.1 267 49.1
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.2e-64 250.8 254 51.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.7e-64 249.6 255 47.5
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.7e-64 249.6 255 47.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.8e-63 246.9 249 51.8
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.8e-63 246.9 245 54.3
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 5.8e-59 231.9 180 70.6
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.0e-58 231.1 254 48.0
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.3e-58 230.7 254 48.4
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.7e-58 230.3 254 48.0
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.7e-58 230.3 254 48.0
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.2e-57 226.1 254 47.2
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.6e-56 223.8 248 48.0
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 6.0e-56 221.9 174 69.5
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 7.9e-56 221.5 243 47.7
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.0e-55 219.5 266 48.9
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 6.7e-55 218.4 249 44.2
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-54 217.6 258 46.9
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 2.1e-53 213.4 200 57.0
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.2e-51 207.6 209 56.0
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.3e-50 204.1 200 55.5
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.2e-50 203.4 186 55.4
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.6e-48 195.7 150 68.7
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 9.7e-46 188.0 174 58.6
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.8e-45 185.7 249 46.2
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.0e-43 180.3 140 65.0
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.2e-42 176.8 248 42.3
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.1e-40 170.2 160 55.0
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.6e-40 169.5 140 62.1
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.0e-39 166.4 181 52.5
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-38 164.1 254 40.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.7e-38 162.2 140 58.6
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.3e-37 158.7 119 67.2
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 9.1e-36 154.8 329 32.8
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 4.5e-35 152.5 103 69.9
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 8.5e-34 148.3 434 31.3
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.1e-32 143.7 145 51.7
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.7e-32 142.5 140 55.0
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 7.4e-30 135.2 160 47.5
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.7e-29 132.9 217 43.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.0e-27 127.1 249 32.1
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.0e-26 122.5 86 74.4
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 9.4e-25 118.2 247 34.0
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.1e-22 111.3 212 35.8
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.7e-21 107.5 244 31.1
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.7e-21 107.5 74 67.6
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 8.2e-21 105.1 167 39.5
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.2e-19 101.3 65 80.0
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 4.5e-19 99.4 248 28.2
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 2.2e-18 97.1 75 61.3
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 6.5e-18 95.5 142 39.4
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.4e-17 91.7 61 78.7
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.4e-15 87.8 141 38.3
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.4e-15 87.8 141 38.3
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.0e-15 86.7 66 62.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 2.2e-13 80.5 63 60.3
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 5.4e-12 75.9 196 31.1
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 7.0e-12 75.5 88 40.9
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 2.0e-11 73.9 131 32.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.2e-09 66.6 216 26.9
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 1.2e-08 64.7 132 30.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 1.0e-07 61.6 39 74.4
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 2.3e-07 60.5 71 39.4
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 3.0e-07 60.1 60 51.7
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 6.8e-07 58.9 70 47.1
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 9.8e-06 55.1 60 41.7
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 9.8e-06 55.1 60 41.7


User provided reference genes

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