Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1256.5 637 100.0
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1200.3 637 94.0
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1199.5 637 94.2
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1199.1 637 94.5
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1198.3 637 94.2
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1196.0 637 93.4
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1193.7 635 93.9
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1192.9 636 93.7
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1192.2 647 92.3
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1191.4 637 93.9
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1191.4 636 93.6
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1191.0 637 92.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1190.6 637 92.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1189.5 637 93.1
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1187.2 637 92.9
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1182.2 636 92.8
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1181.0 633 93.4
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1180.2 635 92.4
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1179.9 636 92.9
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1179.9 637 91.8
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1179.9 637 92.0
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1179.1 631 92.9
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1179.1 637 92.3
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 637 91.5
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1177.9 637 92.0
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1177.5 634 92.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1176.8 637 92.5
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1176.4 637 91.8
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1176.0 637 91.8
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1175.6 637 92.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1174.5 633 92.3
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1172.9 637 91.5
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1172.9 634 92.1
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1172.1 637 92.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 633 92.4
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 637 91.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 634 92.1
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 637 91.8
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 637 91.7
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 633 91.9
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 637 90.6
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 633 91.5
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1165.2 637 90.9
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 636 90.9
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 636 90.9
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 631 92.2
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 633 91.6
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 637 90.7
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 631 91.6
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1161.4 637 91.5
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 637 90.0
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 637 90.3
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1158.7 637 90.6
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 636 90.1
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 637 90.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1155.6 635 90.6
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 637 89.8
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 633 90.5
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 633 90.4
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 633 90.4
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 628 91.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 633 90.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 637 89.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 637 89.3
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 664 86.7
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 636 88.8
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 637 90.4
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 632 91.1
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 632 90.5
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 637 88.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 637 89.3
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 635 88.3
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 636 89.8
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 637 88.7
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 637 89.0
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 637 89.0
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 637 89.0
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 630 90.3
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 637 88.9
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 631 89.9
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 637 88.5
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 634 87.9
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 630 89.2
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 637 88.9
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 637 88.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 630 89.5
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 637 87.3
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 637 87.3
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 633 88.5
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 632 87.2
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 636 88.1
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 637 86.5
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 632 86.7
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 634 86.8
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1114.0 637 86.3
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1111.3 634 86.0
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1098.6 647 86.2
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1091.3 637 85.1
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1084.3 628 85.4
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1078.5 628 84.6
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1077.0 582 92.1
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 8.7e-312 1072.8 628 83.8
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.5e-299 1032.3 631 80.5
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 5.8e-291 1003.8 541 93.0
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.9e-289 998.8 632 77.8
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.8e-287 992.3 534 92.3
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 7.4e-286 986.9 534 91.2
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 1.8e-271 939.1 648 73.0
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 3.7e-269 931.4 635 75.6
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.2e-266 922.2 499 92.4
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.1e-265 919.8 629 73.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 6.3e-261 904.0 656 71.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 3.5e-251 871.7 634 73.5
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 2.2e-250 869.0 503 87.7
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.1e-249 866.7 503 87.1
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.8e-247 859.4 636 73.0
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 4.5e-235 818.1 638 65.7
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 2.3e-231 805.8 497 80.9
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 6.6e-226 787.7 638 62.7
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 1.8e-207 726.5 444 82.7
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.4e-196 689.5 533 69.6
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 2.4e-183 646.4 643 54.1
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.8e-182 641.7 446 75.1
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.4e-180 637.1 354 89.3
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.1e-167 594.3 411 75.4
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 2.2e-165 586.6 315 93.0
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.7e-149 533.9 296 89.2
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.4e-138 497.7 278 90.3
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.4e-114 417.9 527 43.6
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 3.0e-101 373.6 202 91.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.2e-89 335.1 240 71.2
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 6.4e-88 329.3 184 90.2
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 7.8e-86 322.4 231 71.9
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.4e-80 302.4 637 35.5
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 3.9e-77 293.5 163 87.1
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 6.9e-74 282.7 163 85.3
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 4.8e-59 233.4 273 50.9
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 5.0e-56 223.4 230 57.4
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 2.7e-46 191.0 104 90.4
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 7.4e-44 183.0 104 87.5
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 1.4e-39 168.7 99 84.8
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 4.2e-39 167.2 104 76.9
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 9.4e-39 166.0 160 60.0
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 3.0e-37 161.0 90 88.9
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.9e-37 160.6 86 84.9
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.7e-35 155.2 91 85.7
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.8e-35 154.5 91 84.6
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.8e-34 151.8 125 64.0
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.5e-31 142.1 74 85.1
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 1.6e-22 112.1 116 55.2
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.6e-20 104.8 53 94.3
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.4e-18 99.0 60 81.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 7.7e-17 93.2 63 66.7
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.2e-16 91.7 70 62.9
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 2.2e-16 91.7 51 82.4
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.1e-15 89.4 49 83.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 6.8e-13 80.1 56 67.9
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 7.7e-09 66.6 43 72.1


User provided reference genes

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