Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 2.2e-64 248.8 125 100.0
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 1.3e-61 239.6 125 93.6
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 5.0e-61 237.7 125 94.4
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 6.5e-61 237.3 125 93.6
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 5.5e-60 234.2 125 91.2
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 1.2e-59 233.0 125 90.4
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.4e-58 229.6 125 91.2
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 8.8e-58 226.9 122 90.2
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 7.4e-57 223.8 125 88.0
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.8e-56 221.9 125 88.0
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 2.8e-56 221.9 120 87.5
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 3.7e-56 221.5 125 86.4
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 4.8e-56 221.1 125 86.4
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 8.2e-56 220.3 122 90.2
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 1.1e-55 219.9 122 88.5
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.4e-55 219.5 125 85.6
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.4e-55 219.5 125 85.6
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 2.4e-55 218.8 124 85.5
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 4.1e-55 218.0 123 87.8
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 5.3e-55 217.6 122 85.2
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 7.0e-55 217.2 126 87.3
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 7.0e-55 217.2 125 84.0
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 1.2e-54 216.5 124 84.7
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 1.2e-54 216.5 124 84.7
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 1.6e-54 216.1 125 83.2
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.6e-54 216.1 122 85.2
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 1.6e-54 216.1 122 84.4
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 2.0e-54 215.7 126 84.9
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 2.0e-54 215.7 126 84.1
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 2.0e-54 215.7 125 84.0
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 3.5e-54 214.9 125 82.4
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 4.5e-54 214.5 122 85.2
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 4.5e-54 214.5 125 83.2
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 4.5e-54 214.5 122 86.1
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 4.5e-54 214.5 125 84.8
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 5.9e-54 214.2 125 82.4
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.9e-54 214.2 126 83.3
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 5.9e-54 214.2 126 83.3
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.9e-54 214.2 121 85.1
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 7.7e-54 213.8 123 82.1
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 7.7e-54 213.8 125 86.4
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 7.7e-54 213.8 125 85.6
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 1.0e-53 213.4 123 82.9
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.3e-53 213.0 122 84.4
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 1.7e-53 212.6 125 84.8
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.2e-53 212.2 125 85.6
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 2.2e-53 212.2 122 84.4
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 2.2e-53 212.2 125 81.6
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.9e-53 211.8 121 85.1
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 2.9e-53 211.8 124 83.9
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.9e-53 211.8 122 85.2
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 5.0e-53 211.1 125 80.8
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 5.0e-53 211.1 125 82.4
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 6.5e-53 210.7 119 83.2
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 8.5e-53 210.3 123 82.1
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 1.1e-52 209.9 122 82.8
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 1.1e-52 209.9 122 82.8
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 1.1e-52 209.9 122 82.8
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 1.1e-52 209.9 122 82.8
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 1.1e-52 209.9 122 82.8
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 1.1e-52 209.9 155 70.3
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.1e-52 209.9 125 80.8
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 1.5e-52 209.5 119 84.9
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 1.5e-52 209.5 126 82.5
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 1.9e-52 209.1 125 82.4
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.9e-52 209.1 122 82.0
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 2.5e-52 208.8 125 82.4
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 2.5e-52 208.8 122 82.0
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 3.2e-52 208.4 121 82.6
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 4.2e-52 208.0 125 80.8
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 4.2e-52 208.0 122 82.0
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 5.5e-52 207.6 125 82.4
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 5.5e-52 207.6 119 84.0
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 5.5e-52 207.6 125 80.0
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 7.2e-52 207.2 122 82.0
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 1.2e-51 206.5 125 80.0
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 2.1e-51 205.7 125 85.6
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 2.7e-51 205.3 125 80.8
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 2.7e-51 205.3 125 85.6
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 3.6e-51 204.9 122 83.6
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 4.7e-51 204.5 122 81.1
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.1e-51 204.1 125 78.4
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 6.1e-51 204.1 123 81.3
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 1.0e-50 203.4 110 89.1
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.4e-50 203.0 125 77.6
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 1.8e-50 202.6 122 80.3
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.8e-50 202.6 119 79.0
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.3e-50 202.2 124 77.4
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 8.8e-50 200.3 122 78.7
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 1.5e-49 199.5 120 82.5
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.5e-49 199.5 120 79.2
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.5e-49 199.5 120 79.2
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 1.5e-49 199.5 123 78.9
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 2.0e-49 199.1 127 74.8
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 2.6e-49 198.7 125 80.0
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 2.6e-49 198.7 125 80.0
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.6e-49 198.7 109 88.1
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.7e-49 197.6 123 77.2
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 7.5e-49 197.2 125 76.8
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 1.3e-48 196.4 127 72.4
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 5.9e-46 187.6 133 68.4
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 5.9e-46 187.6 125 78.4
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 2.9e-45 185.3 121 75.2
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 5.0e-45 184.5 125 71.2
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 6.5e-45 184.1 123 76.4
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.1e-44 183.3 122 71.3
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 1.5e-44 183.0 122 72.1
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.5e-44 183.0 125 73.6
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.5e-44 182.2 125 72.8
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 3.2e-44 181.8 124 75.0
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.2e-44 181.8 122 76.2
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 3.2e-44 181.8 122 71.3
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 5.5e-44 181.0 125 72.8
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 7.2e-44 180.6 124 74.2
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.6e-43 179.5 123 69.1
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.7e-43 178.7 121 68.6
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 3.0e-42 175.3 124 70.2
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 8.8e-42 173.7 125 69.6
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.7e-40 169.5 97 85.6
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 2.2e-40 169.1 122 66.4
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 2.2e-40 169.1 125 67.2
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 8.3e-40 167.2 122 65.6
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 3.1e-39 165.2 105 76.2
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 9.1e-39 163.7 108 75.9
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 1.7e-37 159.5 122 63.1
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 3.8e-37 158.3 124 66.9
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 4.2e-36 154.8 110 69.1
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 4.0e-34 148.3 123 64.2
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 2.6e-33 145.6 121 57.0
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 1.4e-31 139.8 83 79.5
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 4.5e-30 134.8 90 71.1
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 2.9e-29 132.1 121 62.0
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 7.3e-28 127.5 83 75.9
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 9.5e-28 127.1 123 57.7
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 2.8e-27 125.6 123 49.6
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.4e-26 123.2 125 56.8
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 6.8e-26 120.9 62 93.5
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 2.0e-25 119.4 82 74.4
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 1.1e-23 113.6 100 61.0
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.9e-23 112.8 93 61.3
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.9e-23 112.8 85 64.7
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 2.4e-23 112.5 60 88.3
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 2.0e-22 109.4 69 73.9
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 3.1e-18 95.5 78 65.4
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 2.6e-17 92.4 63 71.4
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 6.0e-14 81.3 103 50.5
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 2.3e-10 69.3 43 74.4
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 7.5e-09 64.3 39 71.8
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.3e-08 63.5 112 36.6
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 1.7e-08 63.2 99 40.4
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 1.6e-06 56.6 110 33.6


User provided reference genes

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