Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 8.5e-34 146.4 70 100.0
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 8.5e-34 146.4 70 100.0
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.0e-26 122.9 67 88.1
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.0e-26 122.9 67 88.1
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 6.5e-26 120.2 65 83.1
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 1.1e-25 119.4 67 86.6
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 1.9e-25 118.6 62 87.1
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.9e-25 118.6 62 88.7
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 2.5e-25 118.2 65 81.5
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.5e-25 118.2 65 81.5
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 3.2e-25 117.9 64 84.4
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 4.2e-25 117.5 65 81.5
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 4.2e-25 117.5 67 83.6
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 5.5e-25 117.1 67 79.1
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 5.5e-25 117.1 65 81.5
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 7.2e-25 116.7 64 81.2
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.2e-24 115.9 65 80.0
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.2e-24 115.9 67 77.6
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.2e-24 115.9 64 81.2
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.6e-24 115.5 67 77.6
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 1.6e-24 115.5 65 81.5
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 7.9e-24 113.2 67 79.1
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 7.9e-24 113.2 65 78.5
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 1.8e-23 112.1 65 76.9
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 1.8e-23 112.1 63 79.4
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 3.0e-23 111.3 63 79.4
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 3.0e-23 111.3 63 79.4
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 3.0e-23 111.3 63 79.4
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 3.0e-23 111.3 64 82.8
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 3.9e-23 110.9 67 76.1
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 5.1e-23 110.5 65 76.9
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 6.7e-23 110.2 65 78.5
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 8.8e-23 109.8 64 78.1
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 8.8e-23 109.8 63 74.6
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 8.8e-23 109.8 65 73.8
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 2.0e-22 108.6 63 77.8
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 2.6e-22 108.2 62 82.3
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 4.4e-22 107.5 66 75.8
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 5.7e-22 107.1 63 77.8
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 5.7e-22 107.1 63 77.8
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 5.7e-22 107.1 64 79.7
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 7.4e-22 106.7 65 75.4
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 7.4e-22 106.7 67 73.1
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 9.7e-22 106.3 64 76.6
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 1.7e-21 105.5 64 76.6
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 2.2e-21 105.1 67 74.6
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.2e-21 105.1 64 76.6
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 2.8e-21 104.8 63 74.6
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 2.8e-21 104.8 63 74.6
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.8e-21 104.8 78 65.4
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 3.7e-21 104.4 65 69.2
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 3.7e-21 104.4 65 69.2
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 4.8e-21 104.0 68 76.5
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 4.8e-21 104.0 63 73.0
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 6.3e-21 103.6 66 69.7
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 6.3e-21 103.6 65 72.3
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 8.2e-21 103.2 65 72.3
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 8.2e-21 103.2 63 79.4
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 1.8e-20 102.1 65 70.8
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 1.8e-20 102.1 63 74.6
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 1.8e-20 102.1 65 67.7
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 2.4e-20 101.7 64 70.3
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 2.4e-20 101.7 62 75.8
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 3.1e-20 101.3 65 70.8
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 4.1e-20 100.9 62 74.2
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 5.3e-20 100.5 61 70.5
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 6.9e-20 100.1 65 69.2
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 6.9e-20 100.1 62 71.0
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 6.9e-20 100.1 65 70.8
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 9.1e-20 99.8 65 67.7
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 1.2e-19 99.4 65 72.3
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 2.0e-19 98.6 63 73.0
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 2.6e-19 98.2 66 69.7
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 3.4e-19 97.8 60 76.7
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 1.0e-18 96.3 64 65.6
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 1.0e-18 96.3 72 62.5
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.8e-18 94.4 87 57.5
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 6.5e-18 93.6 64 70.3
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 2.5e-17 91.7 62 67.7
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 3.2e-17 91.3 63 69.8
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 7.2e-17 90.1 63 66.7
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 9.4e-17 89.7 61 63.9
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.2e-16 89.4 64 67.2
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.2e-16 89.4 64 67.2
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 2.7e-16 88.2 62 64.5
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 8.0e-16 86.7 53 71.7
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 8.0e-16 86.7 53 71.7
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 3.9e-15 84.3 63 58.7
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 6.7e-15 83.6 51 82.4
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 5.7e-14 80.5 64 62.5
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.0e-11 72.0 64 56.2
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 3.8e-10 67.8 59 52.5
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 3.8e-10 67.8 59 52.5
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 9.4e-09 63.2 59 47.5
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 8.0e-08 60.1 35 80.0
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.8e-07 58.9 64 40.6
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.8e-07 58.9 43 62.8
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 2.3e-07 58.5 34 76.5
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 3.0e-07 58.2 34 76.5
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 3.3e-06 54.7 34 73.5
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.3e-06 54.7 34 73.5
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 3.3e-06 54.7 30 83.3
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 3.3e-06 54.7 30 83.3
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 5.7e-06 53.9 35 65.7
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 9.7e-06 53.1 37 64.9
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 9.7e-06 53.1 34 70.6


User provided reference genes

Program Settings