Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1907.9 962 100.0
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1551.2 965 81.8
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1520.8 965 80.7
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1510.4 965 80.3
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1498.0 901 82.9
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1497.3 961 78.7
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1492.6 907 82.7
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1465.3 907 80.2
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1462.2 907 80.3
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1452.2 1025 73.6
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1447.6 912 79.7
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1444.9 910 79.2
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1439.5 965 75.5
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1439.1 937 76.1
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1434.9 938 76.5
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1434.1 934 77.7
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1433.7 905 79.8
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1429.5 959 75.3
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1426.8 908 79.3
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1425.6 965 76.8
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1422.9 956 76.4
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1421.4 913 77.9
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1421.0 947 75.3
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1419.8 904 78.2
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1417.9 947 75.0
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1416.7 880 80.2
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1416.7 904 78.0
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1416.4 901 79.2
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1416.0 947 75.0
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1414.4 905 78.5
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1413.3 973 73.4
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1413.3 957 74.4
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1410.2 996 73.8
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1409.0 904 77.7
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1401.7 890 79.2
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1401.3 937 76.6
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1399.4 969 75.0
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1398.3 945 75.3
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1397.5 910 76.7
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1394.8 908 76.8
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1393.6 962 73.7
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1392.1 959 73.2
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1388.2 960 73.2
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1387.1 910 76.5
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1385.5 906 76.4
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1385.2 962 73.0
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1384.0 885 77.1
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1383.2 889 76.9
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1381.7 895 77.2
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1381.3 897 77.3
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1379.4 968 73.5
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1379.4 890 77.0
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1376.7 908 75.8
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1373.6 904 75.9
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1370.5 967 72.6
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1364.0 908 75.4
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1362.1 900 75.7
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1353.2 935 74.3
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1347.0 929 74.1
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1346.6 992 71.0
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1340.5 1064 66.6
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1334.7 905 75.7
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1313.1 940 73.0
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1308.1 905 73.3
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1300.8 839 76.8
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1297.7 812 80.5
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1296.6 815 78.9
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1275.0 898 71.8
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1270.0 939 70.3
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1258.0 938 69.4
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1241.1 925 69.7
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1226.1 910 68.6
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1220.7 881 70.1
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1218.4 911 67.5
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1216.4 889 67.9
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1208.4 912 67.0
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1206.8 957 65.4
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1206.4 957 65.2
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1205.7 963 65.4
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1196.0 962 64.8
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1188.3 962 64.7
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1186.4 959 66.4
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1184.9 924 65.6
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1182.2 893 67.1
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1179.1 887 67.1
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1173.3 908 64.5
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1166.0 937 66.3
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1162.1 888 66.3
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1160.6 940 64.4
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1158.3 892 66.6
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1154.0 903 65.9
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1144.4 895 65.6
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1107.8 809 68.6
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1103.6 910 63.0
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 2.0e-306 1055.8 821 67.4
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.2e-293 1011.5 643 80.7
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 3.7e-281 971.8 605 81.5
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 1.5e-277 959.9 791 63.2
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 2.1e-276 956.1 894 54.1
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 2.3e-270 936.0 599 78.5
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 7.3e-269 931.0 899 52.9
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 1.3e-265 920.2 679 71.4
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 1.7e-265 919.8 683 70.0
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 8.4e-217 758.1 514 75.3
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 8.7e-214 748.0 911 47.7
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 3.4e-210 736.1 971 47.4
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 4.2e-208 729.2 559 66.9
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 5.1e-206 722.2 445 80.0
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 3.8e-193 679.5 658 55.2
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 7.4e-189 665.2 533 64.4
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 1.4e-187 661.0 699 49.5
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 4.1e-187 659.4 413 79.7
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 3.7e-172 609.8 397 74.6
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 4.6e-146 523.1 387 69.3
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.2e-131 473.4 268 87.3
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 1.2e-109 402.1 275 73.1
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 3.1e-102 377.5 283 68.2
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.2e-98 365.5 338 61.2
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.4e-91 342.0 216 80.1
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 2.4e-86 324.7 238 67.6
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.2e-66 259.2 172 74.4
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 1.4e-62 245.7 249 53.0
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 4.8e-55 220.7 217 49.8
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.4e-46 192.6 224 54.0
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 9.8e-40 169.9 176 60.2
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.6e-37 161.0 98 82.7
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 4.4e-24 117.9 398 25.4
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 1.7e-23 115.9 90 66.7
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 1.7e-23 115.9 74 78.4
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-23 114.4 266 35.0
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.9e-19 102.4 58 87.9
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.7e-15 89.4 69 66.7
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 1.4e-09 69.7 53 66.0
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 4.0e-09 68.2 116 38.8
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 4.9e-07 61.2 37 81.1
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 5.4e-06 57.8 31 87.1


User provided reference genes

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