Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 2.9e-120 435.3 220 100.0
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 1.2e-94 350.1 223 78.9
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.9e-92 342.8 222 78.4
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 3.6e-91 338.6 226 77.0
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 4.8e-91 338.2 223 78.0
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 3.1e-90 335.5 225 77.8
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 3.1e-90 335.5 225 77.8
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 1.5e-89 333.2 242 74.0
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.5e-89 331.6 223 77.6
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.4e-87 326.6 221 75.6
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 2.4e-87 325.9 223 76.7
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.2e-87 325.5 223 76.7
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 3.2e-87 325.5 224 77.2
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 3.2e-87 325.5 227 75.8
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.5e-87 324.7 221 74.7
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 4.6e-86 321.6 219 76.3
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.5e-84 316.6 220 73.6
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 9.6e-84 313.9 225 73.3
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.7e-83 312.0 222 74.8
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.4e-82 310.1 223 75.8
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.8e-82 309.7 221 72.4
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 5.3e-82 308.1 239 69.0
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.7e-80 303.1 220 72.3
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 2.1e-78 296.2 230 68.7
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 2.7e-78 295.8 222 70.3
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 4.6e-78 295.0 223 68.6
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.8e-77 293.1 233 67.8
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 5.1e-77 291.6 223 70.9
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 1.5e-76 290.0 223 70.4
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 4.3e-76 288.5 228 68.9
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 3.7e-75 285.4 205 74.1
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.8e-74 283.1 230 65.2
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 2.6e-73 279.3 240 64.6
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 2.9e-72 275.8 210 69.5
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 5.0e-72 275.0 233 63.9
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 6.5e-72 274.6 227 62.6
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.4e-71 273.5 229 65.9
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 3.2e-71 272.3 232 63.4
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 5.5e-71 271.6 227 62.1
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 7.2e-71 271.2 227 66.5
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 1.2e-70 270.4 223 66.4
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.1e-70 269.6 225 64.9
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 3.6e-70 268.9 220 66.8
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 4.6e-70 268.5 227 67.0
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 2.3e-69 266.2 229 61.6
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 3.0e-69 265.8 233 62.7
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 3.0e-69 265.8 223 63.7
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 6.7e-69 264.6 253 60.5
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 1.5e-68 263.5 223 63.2
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 1.9e-68 263.1 223 63.7
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.7e-67 258.8 225 63.1
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.7e-67 258.8 198 68.7
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 4.8e-67 258.5 235 60.9
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 8.2e-67 257.7 178 77.5
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.4e-66 256.9 221 62.4
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.4e-66 256.1 228 61.4
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.1e-66 255.4 197 67.5
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 4.1e-66 255.4 198 68.2
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 5.3e-66 255.0 228 60.5
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 9.0e-66 254.2 229 61.1
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.2e-65 253.8 225 59.6
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.6e-65 252.7 228 61.0
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 4.5e-65 251.9 207 65.7
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 5.9e-65 251.5 232 60.8
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 7.7e-65 251.1 226 60.6
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 2.9e-64 249.2 231 62.3
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 5.0e-64 248.4 222 59.0
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 5.0e-64 248.4 234 56.8
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 1.4e-63 246.9 212 62.7
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.4e-63 246.9 222 60.4
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 2.5e-63 246.1 228 60.1
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.2e-63 245.7 240 58.3
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 3.2e-63 245.7 222 59.9
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 4.2e-63 245.4 224 59.4
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 4.2e-63 245.4 186 68.3
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 5.5e-63 245.0 223 61.4
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 7.2e-63 244.6 158 77.8
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 1.2e-62 243.8 224 58.9
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 1.2e-62 243.8 230 59.6
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.6e-62 243.4 239 57.7
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.7e-62 242.7 236 58.1
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 2.7e-62 242.7 225 56.9
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 6.1e-62 241.5 221 58.8
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 6.1e-62 241.5 221 58.8
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 7.9e-62 241.1 238 57.1
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 7.9e-62 241.1 224 58.5
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.4e-61 240.4 245 56.3
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.8e-61 240.0 240 57.1
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 2.3e-61 239.6 224 61.6
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 3.9e-61 238.8 225 59.1
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 1.1e-60 237.3 233 56.2
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.5e-60 236.9 220 60.5
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 2.0e-60 236.5 203 62.1
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 2.0e-60 236.5 220 58.6
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.0e-60 236.5 227 58.1
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 2.6e-60 236.1 221 56.6
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 3.3e-60 235.7 220 59.1
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 3.3e-60 235.7 237 54.0
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 4.4e-60 235.3 152 75.7
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 7.4e-60 234.6 227 59.0
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.7e-59 233.4 223 57.4
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.8e-59 232.6 220 57.3
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 4.8e-59 231.9 207 61.8
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.4e-58 230.3 228 57.9
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 3.1e-58 229.2 220 54.1
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 2.0e-57 226.5 220 55.9
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 4.5e-57 225.3 232 55.6
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.2e-56 223.0 238 54.2
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 2.2e-56 223.0 220 57.3
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 2.2e-56 223.0 221 55.2
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 3.8e-56 222.2 222 55.9
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 1.9e-55 219.9 200 58.0
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.9e-55 219.9 229 53.7
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 7.2e-55 218.0 242 52.1
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 1.2e-54 217.2 211 55.9
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 3.6e-54 215.7 132 80.3
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 4.7e-54 215.3 226 53.5
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 1.0e-53 214.2 138 76.8
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 2.3e-53 213.0 219 54.8
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 6.7e-53 211.5 254 48.0
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 2.6e-52 209.5 151 68.9
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 7.4e-52 208.0 193 57.5
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 9.7e-52 207.6 239 49.4
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 9.7e-52 207.6 205 56.1
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.3e-51 207.2 229 51.5
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 2.2e-51 206.5 239 49.4
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 2.2e-51 206.5 232 51.3
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 6.3e-51 204.9 145 69.7
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 8.2e-51 204.5 224 53.6
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 3.1e-50 202.6 245 47.8
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.5e-47 193.0 197 55.3
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.8e-45 186.8 242 46.3
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 4.4e-44 182.2 225 48.9
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 6.3e-43 178.3 259 43.6
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 5.3e-42 175.3 171 52.6
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.7e-41 172.9 146 61.0
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 9.4e-39 164.5 136 61.0
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.4e-37 160.6 235 43.8
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.7e-36 155.2 230 43.9
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 7.0e-34 148.3 169 53.8
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.8e-29 133.7 74 89.2
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.6e-25 120.6 158 51.3
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 2.0e-25 120.2 189 43.9
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 3.3e-23 112.8 218 36.7
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.2e-20 104.4 88 63.6
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 9.8e-20 101.3 89 61.8
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 1.7e-19 100.5 58 79.3
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.0e-16 91.3 81 63.0
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 2.3e-16 90.1 56 73.2
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.1e-14 83.6 116 44.0
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 5.8e-12 75.5 65 58.5
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 3.7e-11 72.8 92 50.0
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.4e-10 68.9 53 62.3
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 5.4e-10 68.9 143 35.7
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.0e-10 68.6 47 68.1
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 3.0e-08 63.2 113 40.7
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 8.6e-08 61.6 73 41.1
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.5e-07 60.1 43 62.8
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 8.1e-06 55.1 129 34.1


User provided reference genes

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