Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 6.1e-215 750.7 433 100.0
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 2.9e-140 502.7 470 61.5
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 6.4e-132 474.9 463 62.9
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 1.4e-131 473.8 479 59.7
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.3e-129 467.2 480 60.8
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.3e-127 460.7 477 56.0
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 1.7e-124 450.3 477 59.7
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 6.4e-124 448.4 475 58.9
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 4.6e-122 442.2 480 59.6
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 3.0e-121 439.5 466 54.5
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.1e-120 437.6 477 52.8
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.5e-120 437.2 475 55.4
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 5.6e-120 435.3 469 53.5
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.4e-120 434.9 470 53.4
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.3e-119 434.1 472 52.3
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 2.1e-119 433.3 468 55.1
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 4.8e-119 432.2 482 54.4
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 1.1e-118 431.0 490 52.0
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.5e-117 427.2 477 52.4
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.5e-117 427.2 465 54.6
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 2.0e-117 426.8 465 53.8
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 7.6e-117 424.9 490 52.0
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 7.6e-117 424.9 490 52.0
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 1.7e-116 423.7 483 52.6
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 1.4e-115 420.6 465 53.3
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 1.9e-115 420.2 481 51.4
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 9.3e-115 417.9 469 52.9
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 9.3e-115 417.9 466 51.9
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 1.6e-114 417.2 486 54.9
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.7e-114 416.4 469 53.7
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 6.0e-114 415.2 481 51.6
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.9e-114 414.8 477 50.5
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.0e-113 414.5 477 52.0
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.0e-113 414.5 477 50.9
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.3e-113 414.1 478 51.3
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.3e-113 414.1 477 50.7
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 7.4e-112 408.3 487 54.6
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 7.4e-112 408.3 485 51.1
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.8e-111 406.4 497 54.7
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 3.7e-111 406.0 333 67.3
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 4.8e-111 405.6 483 55.1
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 8.2e-111 404.8 478 56.1
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.4e-110 404.1 478 51.7
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.8e-110 403.7 476 50.6
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.8e-110 403.7 476 50.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.0e-110 401.4 472 53.2
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 9.0e-110 401.4 460 52.6
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.5e-109 400.6 472 53.4
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 1.5e-109 400.6 469 52.0
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 3.4e-109 399.4 475 48.0
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 4.5e-109 399.1 472 53.2
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 1.7e-108 397.1 486 50.2
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.3e-107 391.3 473 55.0
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.0e-105 386.3 411 55.5
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 6.7e-105 385.2 473 46.9
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 8.7e-105 384.8 473 46.9
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-104 384.0 474 54.9
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.3e-103 380.9 459 50.5
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.6e-103 380.6 472 54.0
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 6.3e-103 378.6 473 49.0
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.7e-100 370.5 473 52.6
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 5.0e-100 369.0 489 51.1
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 5.0e-100 369.0 466 45.7
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 5.5e-99 365.5 471 53.1
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 5.5e-99 365.5 483 49.7
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 5.5e-99 365.5 390 54.4
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 7.2e-99 365.2 480 51.2
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.1e-98 362.1 485 48.2
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 7.9e-98 361.7 469 49.0
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-97 360.5 468 54.7
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 6.7e-97 358.6 485 48.9
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 8.8e-97 358.2 477 48.0
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 1.1e-96 357.8 474 51.5
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 2.0e-96 357.1 477 47.2
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-96 356.7 479 50.3
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 4.3e-96 355.9 475 50.1
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 5.7e-96 355.5 481 49.9
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.8e-94 350.5 470 52.8
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 5.3e-94 349.0 478 49.0
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.1e-94 348.2 447 53.5
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 9.1e-94 348.2 474 46.2
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.2e-93 347.8 477 50.1
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 1.2e-90 337.8 495 47.1
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 2.3e-89 333.6 481 44.1
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.3e-89 333.6 475 49.3
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.3e-89 333.6 475 49.3
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.0e-89 333.2 467 51.4
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 5.7e-88 328.9 485 44.9
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 2.2e-87 327.0 489 46.4
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 8.2e-87 325.1 474 46.0
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.2e-87 325.1 480 50.4
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.1e-86 324.7 466 52.6
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.1e-86 322.8 419 49.4
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 9.1e-86 321.6 467 44.3
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.2e-85 321.2 466 48.5
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 1.2e-85 321.2 478 46.0
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 1.2e-85 321.2 478 46.0
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-84 317.8 354 51.1
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.2e-84 317.0 476 49.4
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 6.5e-84 315.5 328 54.6
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.2e-83 313.2 437 45.5
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 4.2e-83 312.8 491 44.0
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 9.4e-83 311.6 328 54.0
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 5.7e-80 302.4 484 41.3
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.3e-79 301.2 497 42.1
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 5.3e-78 295.8 411 46.7
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 2.0e-77 293.9 299 52.5
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.5e-77 292.7 473 50.1
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 7.7e-77 292.0 499 40.7
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 7.7e-77 292.0 496 40.9
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 7.7e-77 292.0 487 43.9
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.5e-75 287.7 404 46.3
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-75 287.0 293 61.8
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.2e-75 286.2 377 51.5
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 1.0e-73 281.6 492 38.0
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 2.3e-73 280.4 268 59.3
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 1.1e-70 271.6 480 39.2
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 1.0e-68 265.0 309 54.4
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 2.9e-68 263.5 499 37.9
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 1.1e-67 261.5 294 57.8
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.2e-67 258.8 336 48.2
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.6e-61 241.1 276 55.8
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 7.2e-59 232.3 481 40.1
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-58 230.7 298 46.6
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.0e-49 199.9 267 47.6
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.2e-48 198.4 240 55.4
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.5e-48 198.0 462 34.0
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 2.6e-48 197.2 200 53.5
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 9.8e-48 195.3 167 76.0
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 1.1e-46 191.8 256 50.4
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.6e-45 188.0 427 39.3
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-44 184.5 243 47.3
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.0e-40 171.0 290 43.4
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.4e-38 164.1 281 42.3
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.4e-38 162.9 166 64.5
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.6e-34 150.2 130 59.2
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 8.1e-34 149.1 156 54.5
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 1.8e-33 147.9 188 51.6
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.0e-33 146.7 175 48.0
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.1e-30 138.7 86 80.2
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.1e-30 136.0 150 48.7
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.3e-28 131.0 138 53.6
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.8e-25 121.3 148 42.6
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.5e-24 118.2 70 81.4
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 8.4e-23 112.5 235 33.6
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 1.9e-22 111.3 95 58.9
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 9.3e-22 109.0 99 56.6
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.6e-20 102.8 125 48.0
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-16 92.0 61 70.5
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-12 79.0 95 46.3
ECA232G0019 Erigeron canadensis HOM05D002503 ORTHO05D002810 4.5e-08 63.5 162 31.5
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 9.9e-08 62.4 55 61.8
Nitab4.5_0002594g0070 Nicotiana tabacum HOM05D002762 ORTHO05D004643 3.2e-06 57.4 289 28.4


User provided reference genes

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