Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 1.3e-244 849.4 434 100.0
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 3.6e-199 698.4 424 83.3
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.5e-192 675.6 435 79.1
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.6e-191 671.8 435 78.4
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 6.1e-191 671.0 434 78.3
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 2.8e-188 662.1 434 76.7
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 2.7e-186 655.6 436 77.5
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.3e-177 626.7 440 72.5
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 5.0e-177 624.8 461 69.6
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 1.5e-176 623.2 434 74.4
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 9.5e-176 620.5 438 72.6
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 1.2e-175 620.2 434 73.3
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 2.9e-172 609.0 433 71.8
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 4.9e-172 608.2 434 71.4
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 1.4e-171 606.7 515 62.9
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 9.2e-171 604.0 434 71.0
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 6.0e-170 601.3 434 71.2
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 3.9e-169 598.6 434 72.4
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.9e-169 598.6 436 71.8
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.3e-168 595.5 436 71.6
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 4.3e-168 595.1 434 69.6
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 4.3e-168 595.1 425 71.8
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 9.5e-168 594.0 431 70.5
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.6e-167 593.2 434 72.1
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.8e-167 592.4 436 71.1
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 5.2e-166 588.2 436 70.0
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 1.5e-165 586.6 433 70.2
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.5e-165 586.6 433 69.7
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 2.0e-165 586.3 470 65.3
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 2.0e-165 586.3 429 71.6
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.0e-165 586.3 433 69.7
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 3.4e-165 585.5 434 68.4
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 5.8e-165 584.7 433 69.3
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 7.5e-165 584.3 430 69.8
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 1.4e-163 580.1 423 69.5
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 3.2e-163 578.9 429 70.9
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 1.6e-162 576.6 430 69.1
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 2.1e-162 576.2 434 68.7
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 6.0e-162 574.7 441 67.3
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 2.3e-161 572.8 430 69.1
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 2.8e-159 565.8 421 67.9
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 5.8e-157 558.1 436 66.7
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.7e-156 556.6 435 66.7
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 3.7e-156 555.4 435 66.4
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.9e-155 553.1 457 63.2
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 9.2e-155 550.8 435 65.7
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 4.6e-154 548.5 437 66.1
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 3.9e-153 545.4 431 66.4
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 5.1e-153 545.0 436 66.3
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.9e-152 543.1 445 65.6
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 2.5e-152 542.7 434 66.4
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 3.3e-152 542.3 435 64.6
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 9.5e-152 540.8 428 66.6
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 1.6e-151 540.0 433 65.1
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 2.8e-151 539.3 433 63.7
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 3.6e-151 538.9 436 65.8
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 3.6e-151 538.9 430 64.9
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 2.4e-150 536.2 473 60.9
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 2.4e-150 536.2 438 63.9
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 3.1e-150 535.8 426 66.2
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 1.5e-149 533.5 433 64.4
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 4.4e-149 531.9 439 65.8
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 1.3e-148 530.4 434 63.1
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.7e-148 530.0 435 65.3
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.7e-148 530.0 433 63.5
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 2.2e-148 529.6 426 66.0
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 4.2e-147 525.4 425 63.8
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 7.1e-147 524.6 443 63.2
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 3.5e-146 522.3 435 63.9
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 7.8e-146 521.2 422 64.0
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 2.3e-145 519.6 440 63.6
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 2.3e-145 519.6 426 64.8
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 8.7e-145 517.7 442 62.7
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.9e-144 516.5 437 63.2
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 3.3e-144 515.8 452 59.5
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 3.3e-144 515.8 439 64.0
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 9.6e-144 514.2 433 62.1
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 8.1e-143 511.1 434 63.6
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 3.4e-141 505.8 433 62.4
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 3.8e-140 502.3 437 61.1
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 1.1e-139 500.7 430 61.4
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 1.4e-139 500.4 438 61.6
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 6.0e-138 495.0 334 75.4
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 7.8e-138 494.6 446 60.1
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 1.3e-137 493.8 432 61.3
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 3.9e-137 492.3 447 59.5
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 1.9e-136 490.0 432 61.1
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 4.0e-134 482.3 416 62.0
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 4.0e-134 482.3 435 58.9
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.5e-133 480.3 305 78.4
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 6.4e-132 474.9 300 81.7
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 2.4e-131 473.0 430 59.3
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 2.5e-128 463.0 430 58.4
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 9.6e-128 461.1 437 58.4
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 4.0e-126 455.7 435 58.9
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 4.6e-122 442.2 432 53.5
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 7.9e-122 441.4 439 55.8
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 2.8e-111 406.4 256 76.2
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 1.1e-107 394.4 348 61.2
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 4.2e-107 392.5 395 52.9
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 1.1e-104 384.4 437 50.1
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 4.1e-102 375.9 438 51.8
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 5.9e-101 372.1 438 52.5
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 6.1e-98 362.1 247 71.3
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 6.7e-97 358.6 447 46.5
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 4.4e-96 355.9 371 54.7
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 6.8e-81 305.4 374 47.6
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 1.5e-80 304.3 374 47.3
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 5.4e-78 295.8 372 46.8
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 7.0e-78 295.4 438 43.6
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-77 293.1 200 69.0
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 4.7e-74 282.7 442 42.3
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 3.0e-73 280.0 444 41.0
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 6.8e-73 278.9 383 44.4
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.7e-72 275.8 158 82.9
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 1.7e-71 274.2 297 53.5
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 3.1e-70 270.0 452 42.0
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.4e-65 254.6 159 78.6
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 8.0e-58 228.8 434 35.5
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 8.3e-55 218.8 606 30.7
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 1.2e-53 214.9 227 51.5
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 1.7e-47 194.5 287 44.6
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 2.2e-47 194.1 335 40.3
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 7.3e-43 179.1 243 46.9
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 8.1e-42 175.6 125 65.6
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 4.1e-38 163.3 107 72.9
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 1.2e-37 161.8 208 51.4
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 2.3e-36 157.5 325 37.2
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 5.1e-36 156.4 95 78.9
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 1.1e-35 155.2 214 47.2
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 4.3e-35 153.3 100 71.0
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 6.8e-33 146.0 130 62.3
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 6.8e-33 146.0 130 62.3
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 9.6e-27 125.6 305 34.4
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 3.8e-23 113.6 234 40.2
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 4.9e-23 113.2 233 29.2
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 8.4e-23 112.5 350 28.9
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 4.2e-22 110.2 132 48.5
SHI16388 Sapria himalayana HOM05D004826 ORTHO05D006367 1.7e-20 104.8 158 46.2
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 2.3e-20 104.4 362 29.8
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 5.6e-19 99.8 75 61.3
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 9.6e-19 99.0 75 61.3
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 4.0e-17 93.6 79 62.0
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 6.4e-15 86.3 78 57.7
Oeu040654.1 Olea europaea HOM05D004826 ORTHO05D006367 5.1e-12 76.6 96 49.0
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 1.5e-11 75.1 414 26.1
PSO832G0487 Papaver somniferum HOM05D000453 ORTHO05D000387 1.9e-11 74.7 213 28.6
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 3.3e-11 73.9 56 60.7
Manes.01G195775 Manihot esculenta HOM05D000453 ORTHO05D000387 4.3e-11 73.6 181 30.4
FAN12G3656 Fragaria x ananassa HOM05D000453 ORTHO05D000387 2.1e-10 71.2 180 31.1
QL03p067161 Quercus lobata HOM05D000453 ORTHO05D000387 3.7e-10 70.5 179 28.5
Ciclev10031507m.g Citrus clementina HOM05D000453 ORTHO05D000387 4.8e-10 70.1 223 29.1
Cfa009094 Carpinus fangiana HOM05D000453 ORTHO05D000387 6.2e-10 69.7 226 28.3
Lsat_1_v5_gn_3_49560 Lactuca sativa HOM05D000453 ORTHO05D000387 4.0e-09 67.0 238 24.8
arahy.Tifrunner.gnm1.ann1.C0LV86 Arachis hypogaea HOM05D000453 ORTHO05D000387 5.3e-09 66.6 189 28.0
Solyc04g005020.3 Solanum lycopersicum HOM05D000453 ORTHO05D000387 5.3e-09 66.6 187 26.7
Sopen04g001030 Solanum pennellii HOM05D000453 ORTHO05D000387 6.9e-09 66.2 187 26.7
PGSC0003DMG400001922 Solanum tuberosum HOM05D000453 ORTHO05D000387 6.9e-09 66.2 187 26.2
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 1.5e-08 65.1 58 62.1
MBI14_g12781_MAGBIO Magnolia biondii HOM05D000453 ORTHO05D000387 1.5e-08 65.1 177 27.1
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.5e-08 65.1 259 27.4
Sc04g0008840 Simmondsia chinensis HOM05D000453 ORTHO05D000387 1.5e-08 65.1 177 27.1
Aqoxy3G03109 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 2.0e-08 64.7 185 29.7
C01p00040 Brassica napus HOM05D004826 ORTHO05D006367 3.4e-08 63.9 138 37.0
Potri.012G076000 Populus trichocarpa HOM05D000453 ORTHO05D000387 3.4e-08 63.9 176 27.8
BcaC04g20812 Brassica carinata HOM05D000464 ORTHO05D006292 5.8e-08 63.2 184 26.1
C09p38870 Brassica napus HOM05D000464 ORTHO05D006292 5.8e-08 63.2 184 26.1
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 7.6e-08 62.8 83 44.6
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 1.3e-07 62.0 184 25.5
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 1.3e-07 62.0 184 25.5
Nn4g22918 Nelumbo nucifera HOM05D000453 ORTHO05D000387 1.7e-07 61.6 179 27.9
AL1G37940 Arabidopsis lyrata HOM05D000453 ORTHO05D000387 2.2e-07 61.2 180 25.0
AT1G24130 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 2.9e-07 60.8 181 24.3
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 3.8e-07 60.5 83 43.4
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 3.8e-07 60.5 282 25.5
HanXRQChr09g0271851 Helianthus annuus HOM05D000453 ORTHO05D000387 6.5e-07 59.7 176 25.6
Lalb_Chr16g0382521 Lupinus albus HOM05D000453 ORTHO05D000387 6.5e-07 59.7 180 23.9
CANSAT67G0002 Cannabis sativa HOM05D000453 ORTHO05D000387 8.4e-07 59.3 230 25.2
HanXRQChr15g0476101 Helianthus annuus HOM05D000453 ORTHO05D000387 1.1e-06 58.9 244 22.5
RcHm_v2.0_Chr4g0444751 Rosa chinensis HOM05D000453 ORTHO05D000387 1.1e-06 58.9 155 29.0
FvH4_4g35150 Fragaria vesca HOM05D000453 ORTHO05D000387 1.4e-06 58.5 180 28.9
Cfa004227 Carpinus fangiana HOM05D000453 ORTHO05D000387 2.5e-06 57.8 190 27.4
FAN17G1592 Fragaria x ananassa HOM05D000453 ORTHO05D000387 2.5e-06 57.8 157 28.7
CARHR212550 Cardamine hirsuta HOM05D000645 ORTHO05D000494 3.2e-06 57.4 342 22.2
CBR_g41412 Chara braunii HOM05D003006 ORTHO05D003438 4.2e-06 57.0 230 26.5


User provided reference genes

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