Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 4.4e-74 281.2 139 100.0
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.1e-43 178.7 139 69.1
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 6.8e-43 177.6 144 66.7
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.7e-41 172.9 147 65.3
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.2e-41 172.6 147 65.3
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.9e-41 172.2 147 64.6
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.3e-41 170.6 147 64.6
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.1e-40 168.3 144 68.1
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.7e-39 165.6 147 63.3
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 7.8e-39 164.1 147 62.6
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 7.8e-39 164.1 147 62.6
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 3.0e-38 162.2 144 66.0
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 5.0e-38 161.4 161 58.4
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.5e-37 159.1 158 57.0
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 3.3e-37 158.7 142 61.3
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.3e-37 158.3 161 58.4
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.2e-36 156.8 158 57.0
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.2e-36 156.8 144 61.8
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.6e-36 156.4 141 59.6
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 3.6e-36 155.2 161 57.1
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 8.1e-36 154.1 161 55.9
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.1e-35 153.7 160 56.2
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 1.1e-35 153.7 144 63.9
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.1e-35 153.7 144 62.5
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.1e-35 153.7 161 57.1
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.4e-35 153.3 161 55.9
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.4e-35 153.3 161 55.9
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 1.8e-35 152.9 161 56.5
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 2.3e-35 152.5 161 55.3
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.1e-35 152.1 168 52.4
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 4.0e-35 151.8 185 49.7
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 4.0e-35 151.8 144 61.8
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 5.2e-35 151.4 160 55.6
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 5.2e-35 151.4 161 55.9
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.2e-34 150.2 156 55.1
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.5e-34 149.8 160 53.8
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.5e-34 149.8 158 55.7
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.0e-34 149.4 161 56.5
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.0e-34 149.4 161 54.0
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 4.4e-34 148.3 142 61.3
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 4.4e-34 148.3 161 53.4
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 5.8e-34 147.9 154 55.8
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 5.8e-34 147.9 158 53.8
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 9.8e-34 147.1 158 56.3
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.9e-33 145.6 161 52.2
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.7e-33 145.2 160 53.8
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 8.3e-33 144.1 140 58.6
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.9e-32 142.9 159 54.7
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 3.2e-32 142.1 161 51.6
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 9.2e-32 140.6 157 54.8
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.1e-31 139.4 145 56.6
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 4.6e-31 138.3 159 52.8
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 6.0e-31 137.9 161 52.2
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-30 137.1 156 52.6
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-30 137.1 153 53.6
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-30 137.1 156 52.6
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.0e-30 137.1 157 52.2
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.7e-30 136.3 150 54.7
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.7e-30 136.3 159 52.2
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.7e-30 136.3 147 54.4
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.7e-30 136.3 157 52.2
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 2.3e-30 136.0 159 51.6
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 3.9e-30 135.2 159 51.6
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 3.9e-30 135.2 158 51.9
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 5.1e-30 134.8 150 53.3
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 8.6e-30 134.0 173 49.1
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-29 133.3 156 51.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.3e-29 131.7 151 51.7
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 4.3e-29 131.7 160 49.4
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.2e-28 130.2 158 52.5
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.8e-28 129.0 145 53.8
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 3.6e-28 128.6 151 53.0
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 8.1e-28 127.5 143 51.0
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 8.1e-28 127.5 153 50.3
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.3e-27 125.9 144 52.1
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.3e-27 125.9 155 49.0
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 2.3e-27 125.9 200 43.5
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 4.0e-27 125.2 159 46.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 6.8e-27 124.4 160 48.8
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.2e-26 123.6 157 47.8
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.2e-26 123.6 72 84.7
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.5e-26 123.2 159 46.5
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.6e-26 122.5 155 48.4
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 3.4e-26 122.1 157 49.0
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 7.6e-26 120.9 87 71.3
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 9.9e-26 120.6 150 48.0
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 9.9e-26 120.6 157 46.5
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.3e-25 120.2 157 47.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.3e-25 120.2 157 48.4
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.3e-25 120.2 223 36.3
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 2.9e-25 119.0 151 47.7
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.4e-25 117.5 153 49.7
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.1e-24 117.1 153 47.1
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.1e-24 117.1 152 48.0
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.4e-24 116.7 153 43.8
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.4e-24 115.9 72 77.8
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.2e-24 115.5 155 43.9
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 3.2e-24 115.5 155 44.5
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.4e-24 114.8 72 76.4
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 7.1e-24 114.4 155 43.9
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 7.1e-24 114.4 161 44.7
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-23 113.6 155 45.2
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-23 113.6 155 45.2
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.6e-23 113.2 157 46.5
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 2.1e-23 112.8 72 77.8
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.7e-23 112.5 153 45.1
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 3.5e-23 112.1 155 45.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 3.5e-23 112.1 159 45.9
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 3.5e-23 112.1 69 78.3
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-22 110.5 155 44.5
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.0e-22 110.5 70 78.6
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.3e-22 110.2 155 42.6
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.9e-22 108.6 153 44.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 6.6e-22 107.8 180 41.7
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 8.6e-22 107.5 151 43.0
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 8.6e-22 107.5 157 43.3
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.9e-21 106.3 154 44.2
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.9e-21 106.3 154 44.2
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.5e-21 105.9 154 44.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.5e-21 105.9 157 44.6
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 3.3e-21 105.5 157 43.9
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 7.3e-21 104.4 153 43.1
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 7.3e-21 104.4 144 45.1
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 7.3e-21 104.4 144 45.1
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 9.6e-21 104.0 155 41.3
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.2e-20 103.6 150 44.7
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.2e-20 103.6 150 44.7
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.2e-20 103.6 150 44.7
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 1.6e-20 103.2 146 44.5
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.6e-20 103.2 151 43.0
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.6e-20 103.2 157 40.1
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.1e-20 102.8 69 76.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.1e-20 100.9 154 40.9
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 3.1e-19 99.0 150 42.0
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 8.9e-19 97.4 68 69.1
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 8.9e-19 97.4 64 71.9
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.2e-18 97.1 129 47.3
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.5e-18 96.7 163 40.5
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.9e-17 92.4 156 38.5
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.9e-17 92.4 153 39.2
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 3.8e-17 92.0 69 63.8
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 6.4e-17 91.3 153 39.9
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.4e-16 90.1 64 73.4
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.9e-16 89.7 68 66.2
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 2.4e-16 89.4 141 41.1
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.2e-16 89.0 69 66.7
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.2e-16 89.0 69 66.7
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 5.4e-16 88.2 68 60.3
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 9.3e-16 87.4 69 66.7
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.1e-15 86.3 151 35.8
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.1e-15 86.3 170 37.6
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 2.7e-15 85.9 109 46.8
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.6e-15 85.1 153 37.9
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 4.6e-15 85.1 149 38.3
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.3e-14 82.8 143 38.5
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.9e-14 82.0 69 60.9
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.9e-14 82.0 156 35.9
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 7.3e-13 77.8 124 41.9
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.4e-11 73.6 124 39.5
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.4e-11 73.6 63 57.1
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 3.1e-11 72.4 56 60.7
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 5.3e-11 71.6 63 57.1
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 9.0e-11 70.9 116 40.5
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 9.0e-11 70.9 46 69.6
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.2e-10 70.5 122 40.2
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.8e-10 68.2 67 49.3
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.9e-09 65.9 37 81.1
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 6.4e-09 64.7 155 33.5
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 8.4e-09 64.3 125 35.2
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 1.4e-08 63.5 34 82.4
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 5.4e-08 61.6 69 52.2
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 9.3e-08 60.8 33 81.8
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 1.2e-07 60.5 31 87.1
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 7.9e-07 57.8 130 35.4
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 1.3e-06 57.0 59 44.1
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.9e-06 55.5 69 46.4


User provided reference genes

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