Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 0.0e+00 1140.2 569 100.0
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 2.4e-243 845.5 522 84.5
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.4e-219 765.8 506 80.2
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.4e-214 750.0 513 77.2
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 2.7e-210 735.7 511 76.9
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 1.8e-206 723.0 512 74.2
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 8.8e-206 720.7 512 74.6
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.5e-205 719.9 546 71.4
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.5e-205 719.9 515 76.5
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 3.7e-204 715.3 518 73.4
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.1e-203 713.8 546 71.1
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 4.1e-203 711.8 515 73.0
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 9.1e-203 710.7 518 73.0
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.6e-202 709.9 519 72.3
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.6e-202 709.9 520 73.5
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.5e-202 708.8 519 72.1
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.5e-202 708.8 513 72.9
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 5.9e-202 708.0 498 75.9
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 7.7e-202 707.6 523 72.5
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.0e-201 707.2 524 72.5
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.7e-201 706.4 493 74.8
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 2.3e-201 706.1 499 74.9
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 8.6e-201 704.1 516 71.9
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.5e-200 703.4 517 72.1
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.5e-200 702.6 503 73.6
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 5.5e-200 701.4 517 73.3
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 9.5e-200 700.7 519 72.6
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.2e-199 700.3 522 71.3
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 1.2e-199 700.3 528 70.5
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.1e-199 699.5 521 72.4
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 8.0e-199 697.6 519 71.3
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.8e-198 696.4 519 71.3
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.0e-198 695.7 505 71.7
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.2e-198 694.9 490 73.1
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.5e-197 693.3 520 71.3
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 2.0e-197 693.0 513 71.5
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.4e-197 692.2 516 70.9
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 5.7e-197 691.4 469 78.5
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 7.5e-197 691.0 509 74.1
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.7e-196 689.9 539 70.5
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 2.2e-196 689.5 529 70.1
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 2.2e-196 689.5 493 73.0
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 2.8e-196 689.1 490 72.4
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 3.7e-196 688.7 511 71.2
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 4.9e-196 688.3 523 69.8
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.1e-195 687.2 498 71.7
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 3.1e-195 685.6 535 68.8
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.1e-195 685.6 514 70.0
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 4.1e-195 685.3 516 70.2
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 5.4e-195 684.9 496 73.4
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 3.5e-194 682.2 533 67.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.9e-193 679.1 408 84.8
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.9e-193 679.1 522 70.3
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.5e-192 676.8 522 70.3
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.5e-192 676.0 569 65.4
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 1.0e-190 670.6 518 69.3
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.8e-190 669.8 520 67.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-189 667.2 529 67.5
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 2.0e-189 666.4 511 69.5
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 1.7e-188 663.3 507 69.4
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.2e-188 662.9 516 68.4
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 2.4e-187 659.4 522 68.0
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 3.2e-187 659.1 511 68.7
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.2e-187 659.1 514 68.9
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 4.1e-187 658.7 508 68.5
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 9.2e-187 657.5 520 67.3
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.2e-186 657.1 497 70.2
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 2.7e-186 656.0 506 68.6
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.6e-186 655.2 502 68.9
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-185 653.7 564 63.3
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 3.0e-185 652.5 541 65.6
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 3.9e-185 652.1 529 66.0
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.5e-184 650.2 505 67.7
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 5.6e-184 648.3 566 62.5
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 9.5e-184 647.5 506 65.6
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.2e-183 647.1 549 63.4
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 1.2e-183 647.1 470 71.7
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.6e-183 646.7 533 66.4
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.1e-183 646.4 544 64.5
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.6e-183 645.6 488 70.9
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 4.7e-183 645.2 504 69.0
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 6.2e-183 644.8 443 76.7
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 6.2e-183 644.8 497 69.2
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 6.2e-183 644.8 505 68.5
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.4e-182 643.7 503 67.2
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.0e-182 642.1 542 65.9
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 5.2e-182 641.7 533 64.9
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 8.9e-182 641.0 536 64.2
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 2.6e-181 639.4 517 66.5
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 2.6e-181 639.4 515 67.6
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 3.4e-181 639.0 498 68.9
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 9.8e-181 637.5 526 65.0
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.3e-180 637.1 487 68.8
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 6.4e-180 634.8 542 65.3
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.2e-178 630.6 487 69.0
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.0e-178 629.8 504 66.1
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 2.7e-178 629.4 523 66.5
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 3.0e-177 625.9 521 66.0
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.9e-177 625.5 507 67.1
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 5.0e-177 625.2 509 65.8
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.1e-174 617.5 521 63.5
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.4e-174 617.1 517 63.1
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 8.9e-174 614.4 525 63.6
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.0e-173 613.2 512 64.8
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 2.6e-173 612.8 518 64.3
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 4.4e-173 612.1 518 64.1
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 6.4e-172 608.2 519 61.8
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 2.4e-171 606.3 519 63.8
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.4e-171 606.3 488 66.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 4.1e-171 605.5 492 67.3
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 3.0e-169 599.4 509 62.9
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.5e-168 597.0 511 61.8
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 2.5e-168 596.3 496 63.3
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 2.5e-168 596.3 511 62.0
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 2.5e-168 596.3 511 62.2
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 7.3e-168 594.7 513 61.6
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 2.1e-167 593.2 489 64.8
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 4.7e-167 592.0 509 63.9
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 8.1e-167 591.3 506 62.1
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 8.1e-167 591.3 499 63.9
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.1e-166 590.9 506 63.2
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 4.0e-166 589.0 504 60.7
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.6e-165 586.3 508 62.6
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 8.4e-164 581.3 485 62.7
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.9e-163 580.1 515 60.0
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 1.2e-162 577.4 584 55.7
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 3.5e-162 575.9 515 59.8
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 1.3e-161 573.9 572 55.9
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.6e-159 565.8 485 62.9
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.6e-159 565.8 383 74.2
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.7e-154 549.7 486 61.7
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 1.9e-152 543.5 524 58.0
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 2.6e-149 533.1 422 65.2
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.1e-142 511.1 504 57.7
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.9e-140 503.1 524 55.0
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 6.0e-138 495.4 505 55.0
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 4.9e-132 475.7 528 51.1
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 7.9e-130 468.4 503 51.5
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 4.3e-128 462.6 301 78.1
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.8e-126 457.2 478 54.6
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.4e-121 441.0 493 51.7
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.0e-112 410.6 365 60.8
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.6e-109 400.2 257 80.5
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 3.5e-101 373.2 315 60.6
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 3.0e-97 360.1 385 54.5
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 2.2e-95 354.0 591 38.7
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 1.4e-94 351.3 226 81.4
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 6.3e-79 299.3 254 63.4
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 7.0e-70 269.2 163 87.1
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 1.8e-65 254.6 253 56.5
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.4e-62 244.2 265 55.5
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 5.2e-49 199.9 172 66.9
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 6.8e-49 199.5 138 76.8
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 9.3e-38 162.5 319 34.5
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 2.2e-31 141.4 447 26.2
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 7.9e-29 132.9 167 52.1
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 5.1e-28 130.2 515 25.0
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 9.3e-22 109.4 108 53.7
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 2.7e-21 107.8 79 63.3
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 6.0e-21 106.7 83 61.4
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.8e-18 97.8 72 69.4
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 3.7e-18 97.4 67 79.1
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 6.2e-18 96.7 83 63.9
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 7.6e-16 89.7 62 72.6
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.0e-15 89.4 197 35.5
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.3e-15 89.0 101 48.5
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 7.1e-14 83.2 61 65.6
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 5.1e-12 77.0 103 45.6
Hma1.2p1_0172F.1_g076230 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 1.8e-09 68.6 131 39.7
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.7e-07 62.0 35 82.9
Oeu010133.1 Olea europaea HOM05D010114 ORTHO05D000601 2.2e-07 61.6 73 49.3
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 3.8e-07 60.8 58 60.3
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 6.5e-07 60.1 36 80.6
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 1.9e-06 58.5 253 26.5
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 7.2e-06 56.6 36 83.3


User provided reference genes

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