Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 4449.0 2269 100.0
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 3796.9 2588 77.9
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 3407.5 2587 69.9
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 3406.3 2587 69.9
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3289.2 2585 67.5
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 3243.8 2636 66.0
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 3159.4 2588 65.5
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 3106.2 2585 64.3
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 3088.5 2580 64.1
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 3070.0 2580 63.7
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 3015.7 2586 62.3
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 3009.9 2642 61.9
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 2975.3 2586 61.6
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2969.5 2605 61.6
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 2961.4 2589 61.4
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 2959.9 2588 61.6
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 2952.2 2481 63.0
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 2939.1 2582 61.2
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2929.4 2584 61.0
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 2912.5 2469 62.7
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 2902.8 2610 60.3
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 2899.8 2579 60.2
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 2875.5 2587 59.9
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 2852.4 2587 60.1
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 2848.2 2591 60.0
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 2845.1 2567 60.0
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 2835.1 2587 60.0
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 2834.7 2588 59.6
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 2828.9 2578 58.8
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 2817.0 2547 59.3
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 2807.7 2586 58.4
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 2805.8 2594 58.6
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 2798.8 2572 60.4
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 2793.1 2591 59.1
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 2791.5 2589 58.8
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 2788.1 2589 57.9
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 2787.3 2582 59.0
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 2784.6 2589 58.1
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 2737.6 2588 56.8
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 2732.6 2574 58.8
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 2732.6 2588 56.7
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2727.2 2583 56.7
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 2707.9 2564 57.0
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 2697.5 2585 57.6
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 2694.1 2610 56.1
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 2692.1 2486 59.1
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 2681.7 2585 56.0
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 2677.5 2569 56.2
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 2673.7 2557 56.4
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 2673.3 2644 55.2
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 2672.5 2587 57.4
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2671.3 2571 56.6
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 2671.3 2571 56.6
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 2671.0 2562 56.6
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 2667.5 2594 55.7
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 2663.3 2591 55.8
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 2662.1 2591 56.1
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 2655.9 2585 55.5
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 2643.2 2585 55.5
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 2634.8 2582 55.5
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 2632.8 2589 55.3
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 2621.3 2566 55.5
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 2616.3 2582 55.4
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 2585.8 2598 54.5
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2558.9 2588 55.0
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2549.6 2590 54.5
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2544.2 2609 54.7
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 2541.9 2585 54.6
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 2516.5 2587 53.4
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 2504.2 2602 54.2
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 2484.9 2393 56.8
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 2426.7 2600 52.0
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 2422.5 2600 52.1
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 2412.9 2598 51.9
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 2410.9 2591 52.0
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 2407.1 2594 52.2
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 2395.5 2595 51.5
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 2394.0 2574 53.5
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2379.4 2594 51.4
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 2377.1 2511 52.9
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 2374.4 2433 53.9
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2372.4 2594 51.1
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 2371.3 2596 51.3
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 2366.7 2589 51.4
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 2342.4 2621 50.4
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2296.5 2587 49.2
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 2271.9 2391 52.9
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2266.9 2594 48.9
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 2121.7 1623 69.4
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2113.2 2596 48.0
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 1989.5 2038 53.5
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 1947.2 2589 43.5
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 1886.7 2611 42.3
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 1867.8 1512 65.1
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1860.1 1914 53.9
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 1829.7 2585 41.9
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 1709.5 2416 42.4
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1613.6 1811 50.0
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1585.5 2366 40.5
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 1403.7 1593 53.0
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 1383.6 2683 35.1
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1340.5 2687 35.4
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1302.3 2675 35.2
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1246.9 2687 34.1
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 0.0e+00 1189.9 1433 46.8
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1143.6 2245 35.5
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 1.5e-248 864.8 682 67.6
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 2.4e-193 681.4 775 48.5
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 5.9e-168 597.0 1168 36.4
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 5.6e-118 431.0 368 68.5
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 2.6e-91 342.4 261 71.3
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 2.9e-82 312.4 910 29.5
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 3.9e-79 302.0 954 27.3
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 3.8e-66 258.8 423 37.1
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 1.5e-43 183.7 170 64.1
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 1.5e-38 167.2 106 76.4
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 7.0e-36 158.3 299 37.5
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 1.6e-35 157.1 104 74.0
Actinidia36270 Actinidia chinensis HOM05D003926 ORTHO05D038129 1.5e-33 150.6 283 36.7
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.7e-27 129.8 88 78.4
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 1.0e-26 127.9 110 63.6
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.8e-26 125.9 88 78.4
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 6.5e-26 125.2 87 75.9
Actinidia14026 Actinidia chinensis HOM05D003926 ORTHO05D018213 1.1e-25 124.4 118 55.9
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.5e-25 124.0 88 77.3
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 2.5e-25 123.2 92 66.3
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 9.4e-25 121.3 222 37.8
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 9.4e-25 121.3 120 57.5
Eucgr.I02066 Eucalyptus grandis HOM05D003926 ORTHO05D018213 8.8e-23 114.8 143 46.2
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 7.5e-22 111.7 87 70.1
CDE01G0142 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 9.8e-22 111.3 137 43.8
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 5.4e-20 105.5 85 67.1
Nn1g06304 Nelumbo nucifera HOM05D003926 ORTHO05D018213 9.1e-20 104.8 117 50.4
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 5.9e-19 102.1 57 87.7
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 6.6e-18 98.6 78 61.5
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 1.5e-17 97.4 172 40.7
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 5.5e-17 95.5 95 57.9
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 5.7e-14 85.5 120 41.7
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 8.3e-13 81.6 92 52.2
Psat4g018040 Pisum sativum HOM05D003926 ORTHO05D005273 3.2e-12 79.7 116 40.5
Psat3g160120 Pisum sativum HOM05D003926 ORTHO05D005273 1.9e-09 70.5 60 53.3
CDE02G3037 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 3.3e-09 69.7 81 46.9
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 6.1e-08 65.5 50 64.0
SHI25819 Sapria himalayana HOM05D000105 ORTHO05D000023 6.1e-08 65.5 110 35.5
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 1.4e-07 64.3 46 71.7


User provided reference genes

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